FC930915

Overview
NameFC930915
Unique NameFC930915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_MORS2 (Malate dehydrogenase OS=Moritella sp. (strain 2D2) GN=mdh PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.591e-27
Identity = 70/117 (59.83%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL  +DVV+I AGV RKPGM R DLFNINAGI+K+L S  A+ CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTDVTITGFSGIDPTA-ALVGADVVLISAGVARKPGMDRSDLFNINAGIIKNLASKCAEVCPTACIGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_HAEDU (Malate dehydrogenase OS=Haemophilus ducreyi GN=mdh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.591e-27
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQL------GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KV VLGAAGGIGQ L+LL+KL  P  + LALYDI+  TPG+A D+ HI T     GY G D          AL+D+++VII AG+ RKPGMTR DLFNINAGIVKDL   +A+ CP A + ++
Sbjct:    2 KVTVLGAAGGIGQTLSLLLKLRLPAGADLALYDISPVTPGIAVDISHIPTSVNAIGYAGEDPSVALKDPSVALKDTNLVIITAGIARKPGMTRADLFNINAGIVKDLVEKVAEVCPMACIGIV 124          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_PECCP (Malate dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.078e-27
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ GY G D    AL  +D+V+I AGV RKPGM R DLFN+NAGIV++L   IA  CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGYSGEDAK-PALAGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIAVTCPKACIGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_AERHH (Malate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.078e-27
Identity = 71/117 (60.68%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  +V G+ G D    AL  +DVV+I AGV RKPGM R DLFNINAGIVK+L    A  CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNRLPAGSELSLYDIAPVTPGVAVDLSHIPTDVKVKGFCGEDP-SPALVGADVVLISAGVARKPGMDRSDLFNINAGIVKNLVEKCAASCPKALIGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_SERP5 (Malate dehydrogenase OS=Serratia proteamaculans (strain 568) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.714e-27
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    AL  +DVV+I AGV RKPGM R DLFN+NAGIV++L   +A  CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALHGADVVLISAGVARKPGMDRSDLFNVNAGIVRNLIQQVATTCPKACIGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ERWCT (Malate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.714e-27
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ GY G D    AL  +D+V+I AGV RKPGM R DLFN+NAGIV++L   IA  CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGYSGEDAK-PALAGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIAITCPKACIGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_EDWI9 (Malate dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=mdh PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.898e-27
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  +V G+ G D    AL  +D+V+I AGV RKPGM R DLFN+NAGI+++L   +A+  PNA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKVCGFGGEDA-SPALVGADIVLISAGVARKPGMDRSDLFNVNAGIIRNLIGQVARTSPNACIGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_AERS4 (Malate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=mdh PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.898e-27
Identity = 70/117 (59.83%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  +V G+ G D    AL  +DVV+I AGV RKPGM R DLFNIN GIVK+L    A  CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNRLPAGSELSLYDIAPVTPGVAVDLSHIPTDVKVKGFCGEDP-SPALVGADVVLISAGVARKPGMDRSDLFNINPGIVKNLVEKCAASCPKALIGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_VIBMI (Malate dehydrogenase (Fragment) OS=Vibrio mimicus GN=mdh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.945e-25
Identity = 68/111 (61.26%), Postives = 76/111 (68.47%), Query Frame = 1
Query:  196 AAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            AAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV++ AGV RKPGM R DLFN+NAGIVK L   IA  CP A V +I
Sbjct:    1 AAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVTIKGYAGEDPT-PALEGADVVLVSAGVARKPGMDRADLFNVNAGIVKALAETIAVVCPKACVGII 110          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_KLEPN (Malate dehydrogenase (Fragments) OS=Klebsiella pneumoniae GN=mdh PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.669e-24
Identity = 67/116 (57.76%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVL AAGGI Q LALL+K +       LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   IAK CP A + +I
Sbjct:    2 KVAVLXAAGGI-QALALLLKTS-------LYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGII 108          
The following BLAST results are available for this feature:
BLAST of FC930915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
MDH_MORS21.591e-2759.83Malate dehydrogenase OS=Moritella sp. (strain 2D2)... [more]
MDH_HAEDU1.591e-2755.28Malate dehydrogenase OS=Haemophilus ducreyi GN=mdh... [more]
MDH_PECCP2.078e-2758.97Malate dehydrogenase OS=Pectobacterium carotovorum... [more]
MDH_AERHH2.078e-2760.68Malate dehydrogenase OS=Aeromonas hydrophila subsp... [more]
MDH_SERP52.714e-2758.12Malate dehydrogenase OS=Serratia proteamaculans (s... [more]
MDH_ERWCT2.714e-2758.97Malate dehydrogenase OS=Erwinia carotovora subsp. ... [more]
MDH_EDWI97.898e-2757.26Malate dehydrogenase OS=Edwardsiella ictaluri (str... [more]
MDH_AERS47.898e-2759.83Malate dehydrogenase OS=Aeromonas salmonicida (str... [more]
MDH_VIBMI1.945e-2561.26Malate dehydrogenase (Fragment) OS=Vibrio mimicus ... [more]
MDH_KLEPN3.669e-2457.76Malate dehydrogenase (Fragments) OS=Klebsiella pne... [more]

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Properties
Property NameValue
Genbank descriptionC34110D08EF PostHarvP1 Citrus clementina cDNA clone C34110D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930915 ID=FC930915; Name=FC930915; organism=Citrus clementina; type=EST; length=524bp
GTCTTCTTTAACCTCTCACCTTTCTCGTTCAACGGTCTCTTCATTATCAT
TTCTCTCCCTGCCTCTCTAAAGTCTAAACCCGCAACAAAAATGAGATCTT
CAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGC
TACTCCTCCGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGC
TGGCGGGATCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTG
TCTCCAGGCTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCT
GATGTCGGCCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAA
TGATCAGCTTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGG
CTGGTGTTCCCAGGAAACCGGGTATGACGCGTGATGATCTATTTAACATC
AATGCTGGAATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCC
CAATGCAATTGTTAACATGATTAG
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