FC930915

Overview
NameFC930915
Unique NameFC930915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_SALMU (Malate dehydrogenase (Fragment) OS=Salmonella muenchen GN=mdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.394e-23
Identity = 63/107 (58.88%), Postives = 75/107 (70.09%), Query Frame = 1
Query:  208 IGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            IGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D +  ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   IAK CP A V +I
Sbjct:    1 IGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGED-VTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 106          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHC_YEAST (Malate dehydrogenase, cytoplasmic OS=Saccharomyces cerevisiae GN=MDH2 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 9.991e-22
Identity = 58/120 (48.33%), Postives = 77/120 (64.17%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKL---------NPLVSR--LALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 498
            K+A+LGAAGGIGQ L+LL+K          N  V+   LALYD+      GV AD+ HI+T   V+ +     +   L ++ +V+IPAGVPRKPGMTRDDLFN+NAGI+  L  +IA+ C
Sbjct:   15 KIAILGAAGGIGQSLSLLLKAQLQYQLKESNRSVTHIHLALYDVNQEAINGVTADLSHIDTPISVSSHSPAGGIENCLHNASIVVIPAGVPRKPGMTRDDLFNVNAGIISQLGDSIAECC 134          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_KLEVA (Malate dehydrogenase (Fragment) OS=Klebsiella variicola GN=mdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.595e-19
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  262 ALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            +LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   IAK CP A + +I
Sbjct:    1 SLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGVI 87          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_KLEOX (Malate dehydrogenase (Fragment) OS=Klebsiella oxytoca GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.008e-18
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  283 TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   IAK CP A V +I
Sbjct:    4 TPGVAVDLSHIPTDVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACVGII 82          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_KLEPR (Malate dehydrogenase (Fragment) OS=Klebsiella pneumoniae subsp. rhinoscleromatis GN=mdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.929e-18
Identity = 50/88 (56.82%), Postives = 61/88 (69.32%), Query Frame = 1
Query:  262 ALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            +LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   IAK  P A + +I
Sbjct:    1 SLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTRPQACIGII 87          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_KLETE (Malate dehydrogenase (Fragment) OS=Klebsiella terrigena GN=mdh PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.673e-17
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  283 TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   IAK  P A + +I
Sbjct:    6 TPGVAVDLSHIPTDVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTSPQACIGII 84          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ANAMM (Malate dehydrogenase OS=Anaplasma marginale (strain St. Maries) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.545e-14
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KV+++GA G IG  LA ++  + +V  L L D+A   T G   DVG          Y+       A+E SD V++ AG+PRK GM+R+DL N NA +V+++   IAKY P A+V ++
Sbjct:    8 KVSLVGA-GNIGGALAHMLGASQVVKELVLVDVAGGMTEGKVLDVGQALALLGSDVYITGGSDYAAIEHSDAVVVTAGIPRKEGMSREDLLNTNAAVVRNIAENIAKYSPGALVIVV 123          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ANAMF (Malate dehydrogenase OS=Anaplasma marginale (strain Florida) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.545e-14
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KV+++GA G IG  LA ++  + +V  L L D+A   T G   DVG          Y+       A+E SD V++ AG+PRK GM+R+DL N NA +V+++   IAKY P A+V ++
Sbjct:    8 KVSLVGA-GNIGGALAHMLGASQVVKELVLVDVAGGMTEGKVLDVGQALALLGSDVYITGGSDYAAIEHSDAVVVTAGIPRKEGMSREDLLNTNAAVVRNIAENIAKYSPGALVIVV 123          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_RHORT (Malate dehydrogenase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.442e-14
Identity = 53/116 (45.69%), Postives = 71/116 (61.21%), Query Frame = 1
Query:  175 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEV-AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            +K+A++GA G IG  LA L+ L  L   + L+DIA  TP G A D+        V A Y G++    A++D+DVVI+ AGVPRKPGM+RDDL  INA ++  +   I   CPNA V
Sbjct:    4 KKIALVGA-GNIGGTLAHLIGLKEL-GDVVLFDIAEGTPQGKALDIAESTPIEGVDASYSGSNDYA-AIKDADVVIVTAGVPRKPGMSRDDLIGINAKVMSAVGQGIRANCPNAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_PELUB (Malate dehydrogenase OS=Pelagibacter ubique GN=mdh PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.871e-14
Identity = 49/119 (41.18%), Postives = 69/119 (57.98%), Query Frame = 1
Query:  175 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY----MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            +K++++GA G IG  LA L+    +   + L+D+A+    G A D+      S V G+     G D   + ++DSDV+II AGVPRKPGM+RDDL  IN  I+K +   I K  PNA V
Sbjct:    2 KKISLIGA-GQIGGTLAHLIGTKEVADEVVLFDVASGIAKGKALDIAQ---SSSVDGFNVKFSGTDNY-EDIKDSDVIIITAGVPRKPGMSRDDLLGINLKIIKQVAEGIKKNAPNAFV 115          
The following BLAST results are available for this feature:
BLAST of FC930915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
MDH_SALMU1.394e-2358.88Malate dehydrogenase (Fragment) OS=Salmonella muen... [more]
MDHC_YEAST9.991e-2248.33Malate dehydrogenase, cytoplasmic OS=Saccharomyces... [more]
MDH_KLEVA1.595e-1957.95Malate dehydrogenase (Fragment) OS=Klebsiella vari... [more]
MDH_KLEOX3.008e-1858.75Malate dehydrogenase (Fragment) OS=Klebsiella oxyt... [more]
MDH_KLEPR3.929e-1856.82Malate dehydrogenase (Fragment) OS=Klebsiella pneu... [more]
MDH_KLETE5.673e-1756.25Malate dehydrogenase (Fragment) OS=Klebsiella terr... [more]
MDH_ANAMM1.545e-1439.32Malate dehydrogenase OS=Anaplasma marginale (strai... [more]
MDH_ANAMF1.545e-1439.32Malate dehydrogenase OS=Anaplasma marginale (strai... [more]
MDH_RHORT3.442e-1445.69Malate dehydrogenase OS=Rhodospirillum rubrum (str... [more]
MDH_PELUB5.871e-1441.18Malate dehydrogenase OS=Pelagibacter ubique GN=mdh... [more]

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Properties
Property NameValue
Genbank descriptionC34110D08EF PostHarvP1 Citrus clementina cDNA clone C34110D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930915 ID=FC930915; Name=FC930915; organism=Citrus clementina; type=EST; length=524bp
GTCTTCTTTAACCTCTCACCTTTCTCGTTCAACGGTCTCTTCATTATCAT
TTCTCTCCCTGCCTCTCTAAAGTCTAAACCCGCAACAAAAATGAGATCTT
CAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGC
TACTCCTCCGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGC
TGGCGGGATCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTG
TCTCCAGGCTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCT
GATGTCGGCCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAA
TGATCAGCTTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGG
CTGGTGTTCCCAGGAAACCGGGTATGACGCGTGATGATCTATTTAACATC
AATGCTGGAATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCC
CAATGCAATTGTTAACATGATTAG
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