FC930915

Overview
NameFC930915
Unique NameFC930915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_RICB8 (Malate dehydrogenase OS=Rickettsia bellii (strain OSU 85-389) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.001e-13
Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            K++++G+ G IG  LA L+ L  L   + L+D+A     G A D+   NT   S++     ND   + +E SD +II AG+PRKPGM+RDDL ++N GI+K +   + KY PNA V +I
Sbjct:    6 KISLIGS-GNIGGMLAHLISLKNL-GDIVLFDVAEGIPQGKALDIMQANTLAGSDIKIKGTNDY--KDIEGSDAIIITAGLPRKPGMSRDDLISVNTGIMKSVAENVKKYAPNAFVIVI 120          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_RICBR (Malate dehydrogenase OS=Rickettsia bellii (strain RML369-C) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.308e-13
Identity = 49/119 (41.18%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            K+ ++G+ G IG  LA L+ L  L   + L+D+A     G A D+   NT   S++     ND   + +E SD +II AG+PRKPGM+RDDL ++N GI+K +   + KY PNA V +I
Sbjct:    6 KILLIGS-GNIGGTLAHLISLKNL-GDIVLFDVAEGIPQGKALDIMQANTLAGSDIKIKGTNDY--KDIEGSDAIIITAGLPRKPGMSRDDLISVNTGIMKSVAENVKKYAPNAFVIVI 120          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_PARL1 (Malate dehydrogenase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.970e-13
Identity = 52/120 (43.33%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  175 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-----GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            +K+A++G  G IG  LALL  L  L   + ++DIA     G A D+        V GY       ND  G  ++ +DVVI+ AGVPRKPGM+RDDL  IN  ++K +   IAKY PNA V
Sbjct:    4 KKIALIGG-GQIGGTLALLAGLKEL-GDVVIFDIAEGLPQGKALDLAQTGP---VEGYNTALSGANDYKG--IKGADVVIVTAGVPRKPGMSRDDLLGINLKVMKQVGEGIAKYAPNAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_EHRRW (Malate dehydrogenase OS=Ehrlichia ruminantium (strain Welgevonden) GN=mdh PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.491e-13
Identity = 42/121 (34.71%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  166 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            +  +K+A++G+ G IG  +A L++L  L   + L DI +    G A D+   +   +  G +        +E++D +I+ AG+ RKPGM+RDDL + N  I+K++ + IAKY PNA V ++
Sbjct:    2 IQSKKIALIGS-GNIGGMIAYLIRLKNL-GDVVLLDINDGMAKGKALDIAESSPIGKYNGEIFGTNNYADIENADAIIVTAGITRKPGMSRDDLISTNVNIIKEIATNIAKYAPNAFVIVV 120          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_EHRRG (Malate dehydrogenase OS=Ehrlichia ruminantium (strain Gardel) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.491e-13
Identity = 42/121 (34.71%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  166 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            +  +K+A++G+ G IG  +A L++L  L   + L DI +    G A D+   +   +  G +        +E++D +I+ AG+ RKPGM+RDDL + N  I+K++ + IAKY PNA V ++
Sbjct:    6 IQSKKIALIGS-GNIGGMIAYLIRLKNL-GDVVLLDINDGMAKGKALDIAESSPIGKYNGEIFGTNNYADIENADAIIVTAGITRKPGMSRDDLISTNVNIIKEIATNIAKYAPNAFVIVV 124          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_RICAH (Malate dehydrogenase OS=Rickettsia akari (strain Hartford) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.477e-13
Identity = 48/119 (40.34%), Postives = 73/119 (61.34%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            K++++G+ G IG  LA L+ L  L   + L+D+A     G A D+   +T   S++     ND   + +E SD +II AG+PRKPGM+RDDL +IN GI+K++   + KY P+A V +I
Sbjct:    6 KISLIGS-GNIGGTLAHLISLREL-GDIVLFDVAEGVPQGKALDLMQASTIAGSDIKITGTNDY--KDIEGSDAIIITAGLPRKPGMSRDDLISINTGIMKNVAENVKKYAPDAFVIVI 120          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_FLAJ1 (Malate dehydrogenase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.446e-12
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS----EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KV ++GA G +G   A ++    + S + L DI      G A D+    T +    +V+G + ND    A   SDVV+I +G+PRKPGMTR++L  INAGIVK +   + KY PN I+ ++
Sbjct:    2 KVTIVGA-GNVGATCADVISYRGIASEVVLLDIKEGFAEGKALDITQCATNTGFNTKVSG-VTNDYSKTA--GSDVVVITSGIPRKPGMTREELIGINAGIVKTVAENVLKYSPNTIIVVV 118          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_CYTH3 (Malate dehydrogenase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.446e-12
Identity = 47/123 (38.21%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY------MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KV V+GA G +G   A ++    +V+ + L DI      G A D+     ++ +  Y      + ND    A  +SDVV+I +G+PRKPGMTRDDL + NAGIV+ +  ++ KY PNAI+ ++
Sbjct:    2 KVTVVGA-GNVGATCADVLAYREIVNEVILLDIKEGVAEGKALDIWQ---KAPITQYDTKTTGVTNDYSKTA--NSDVVVITSGLPRKPGMTRDDLISTNAGIVRAVTESVVKYSPNAIIIVV 118          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_PARD8 (Malate dehydrogenase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.889e-12
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY----MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KV V+GA G +G   A ++  N +   + + D+         +  + T +++ G+    +G     +   +SDVV+I +G+PRKPGMTR++L  +NAGIVK +   I KY PNAI+ +I
Sbjct:    3 KVTVVGA-GNVGATCANVLAFNEVADEVVMLDVKEGVSEGKAMDMMQT-AQLLGFDTKVVGCTNDYEKTANSDVVVITSGIPRKPGMTREELIGVNAGIVKSVAQNILKYSPNAILVVI 119          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_BACTN (Malate dehydrogenase OS=Bacteroides thetaiotaomicron GN=mdh PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.467e-12
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KV V+GA G +G   A ++  N +   + + D+    + G A D+      +   + V G   ND    A  +SDVV+I +G+PRKPGMTR++L  +NAGIVK +   I KY PNAI+ +I
Sbjct:    3 KVTVVGA-GNVGATCANVLAFNEVADEVVMLDVKEGVSEGKAMDMMQTAQLLGFDTTVVGCT-NDYAQTA--NSDVVVITSGIPRKPGMTREELIGVNAGIVKSVAENILKYSPNAILVVI 119          
The following BLAST results are available for this feature:
BLAST of FC930915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
MDH_RICB81.001e-1341.18Malate dehydrogenase OS=Rickettsia bellii (strain ... [more]
MDH_RICBR1.308e-1341.18Malate dehydrogenase OS=Rickettsia bellii (strain ... [more]
MDH_PARL14.970e-1343.33Malate dehydrogenase OS=Parvibaculum lavamentivora... [more]
MDH_EHRRW6.491e-1334.71Malate dehydrogenase OS=Ehrlichia ruminantium (str... [more]
MDH_EHRRG6.491e-1334.71Malate dehydrogenase OS=Ehrlichia ruminantium (str... [more]
MDH_RICAH8.477e-1340.34Malate dehydrogenase OS=Rickettsia akari (strain H... [more]
MDH_FLAJ11.446e-1238.84Malate dehydrogenase OS=Flavobacterium johnsoniae ... [more]
MDH_CYTH31.446e-1238.21Malate dehydrogenase OS=Cytophaga hutchinsonii (st... [more]
MDH_PARD81.889e-1235.29Malate dehydrogenase OS=Parabacteroides distasonis... [more]
MDH_BACTN2.467e-1238.84Malate dehydrogenase OS=Bacteroides thetaiotaomicr... [more]

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Properties
Property NameValue
Genbank descriptionC34110D08EF PostHarvP1 Citrus clementina cDNA clone C34110D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930915 ID=FC930915; Name=FC930915; organism=Citrus clementina; type=EST; length=524bp
GTCTTCTTTAACCTCTCACCTTTCTCGTTCAACGGTCTCTTCATTATCAT
TTCTCTCCCTGCCTCTCTAAAGTCTAAACCCGCAACAAAAATGAGATCTT
CAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGC
TACTCCTCCGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGC
TGGCGGGATCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTG
TCTCCAGGCTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCT
GATGTCGGCCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAA
TGATCAGCTTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGG
CTGGTGTTCCCAGGAAACCGGGTATGACGCGTGATGATCTATTTAACATC
AATGCTGGAATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCC
CAATGCAATTGTTAACATGATTAG
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