FC930915

Overview
NameFC930915
Unique NameFC930915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.255e-40
Identity = 81/118 (68.64%), Postives = 94/118 (79.66%), Query Frame = 1
Query:  169 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            P  KVA+LGAAGGIGQ L+LLMK+NPLVS L LYD+ N PGV ADV H++T + V G++G  QL  AL   D+VIIPAG+PRKPGMTRDDLF INAGIVK LC  +AK CPNAIVN+I
Sbjct:   41 PGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLI 158          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 2.141e-40
Identity = 81/118 (68.64%), Postives = 94/118 (79.66%), Query Frame = 1
Query:  169 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            P  KVA+LGAAGGIGQ L+LLMK+NPLVS L LYD+ N PGV ADV H++T + V G++G  QL  AL   D+VIIPAGVPRKPGMTRDDLF INAGIV+ LC  +AK CPNAIVN+I
Sbjct:   45 PGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLI 162          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHM_MACFA (Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.091e-39
Identity = 83/139 (59.71%), Postives = 107/139 (76.98%), Query Frame = 1
Query:  115 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            +  LA+PA A   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI T++ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++ P A++ +I
Sbjct:    2 LSALARPASAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAVVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLAAACAQHRPEAMICII 140          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHM_CAEEL (Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.830e-38
Identity = 80/139 (57.55%), Postives = 104/139 (74.82%), Query Frame = 1
Query:  118 KTLAKPAGARGYSSESVPDR----KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KTL + A   G  + SV       KVA+LGAAGGIGQPL LL+K +PLV+ LALYD+ NTPGVAAD+ HI++ ++V  + G  +L  A+E++DV++IPAGVPRKPGMTRDDLFN NAGIV+DL + IAK  P A++ +I
Sbjct:    6 KTLVQAAANSGLRAVSVRHSSQAPKVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAII 144          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHM_SCHPO (Malate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=MDH1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.308e-36
Identity = 80/130 (61.54%), Postives = 93/130 (71.54%), Query Frame = 1
Query:  121 TLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ-LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 507
            T  K    R +S+ S    KVAVLGA GGIGQPL++L+KLN  VS LAL+DI   PGVAAD+GHINT S V GY  +D+ L +AL  +DVVIIPAGVPRKPGMTRDDLF  NA IV+DL  A  + CP A
Sbjct:   11 TPLKSIAPRSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGAPGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETCPEA 140          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHP_YEAST (Malate dehydrogenase, peroxisomal OS=Saccharomyces cerevisiae GN=MDH3 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.643e-32
Identity = 67/115 (58.26%), Postives = 86/115 (74.78%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVA+LGA+GG+GQPL+LL+KL+P VS LALYDI    G+  D+ HINT S   GY   D +   L ++ VV+IPAGVPRKPG+TRDDLF +NAGIVK L +A+ K+ PNA + +I
Sbjct:    3 KVAILGASGGVGQPLSLLLKLSPYVSELALYDIRAAEGIGKDLSHINTNSSCVGY-DKDSIENTLSNAQVVLIPAGVPRKPGLTRDDLFKMNAGIVKSLVTAVGKFAPNARILVI 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHM_YEAST (Malate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=MDH1 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.065e-31
Identity = 73/128 (57.03%), Postives = 89/128 (69.53%), Query Frame = 1
Query:  145 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN--DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            R +SS      KV VLGA GGIGQPL+LL+KLN  V+ L LYD+    GVA D+ HI T S V G+     D L  AL+D+D+V+IPAGVPRKPGMTRDDLF INA IV+DL +A A+  PNA + +I
Sbjct:    8 RAFSSTVANPYKVTVLGAGGGIGQPLSLLLKLNHKVTDLRLYDLKGAKGVATDLSHIPTNSVVKGFTPEEPDGLNNALKDTDMVLIPAGVPRKPGMTRDDLFAINASIVRDLAAATAESAPNAAILVI 135          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_HAES2 (Malate dehydrogenase OS=Haemophilus somnus (strain 2336) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.047e-31
Identity = 75/117 (64.10%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            K+AVLGAAGGIGQ LALL+KL  P  S L+LYDIA  TPGVAADV HI T  ++ G+ G D +  ALE++DVV+I AGV RKPGM R DLFNINAGIVK+L   +AK CP A V +I
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAGEDPI-PALENADVVLISAGVARKPGMDRSDLFNINAGIVKNLIEKVAKTCPKACVGII 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDHM_SCHMA (Malate dehydrogenase, mitochondrial (Fragment) OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.285e-31
Identity = 63/109 (57.80%), Postives = 86/109 (78.90%), Query Frame = 1
Query:  196 AAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            A+GGIG+PL+LL+K +PL+S+LALYDIA+  GVAAD+ HI T++ V  ++G  +L + L  ++VVIIPAG+PRKPGMTRDDLFN NA IV +L  + AK CP A++ +I
Sbjct:    1 ASGGIGEPLSLLLKQSPLISQLALYDIAHVKGVAADLSHIETQAHVTAHLGPGELAECLTGANVVIIPAGLPRKPGMTRDDLFNTNASIVAELIDSCAKNCPKAMICII 109          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_HAES1 (Malate dehydrogenase OS=Haemophilus somnus (strain 129Pt) GN=mdh PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.015e-31
Identity = 75/117 (64.10%), Postives = 87/117 (74.36%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            K+AVLGAAGGIGQ LALL+KL  P  S L+LYDIA  TPGVAADV HI T  ++ G+ G D    ALE++DVV+I AGV RKPGM R DLFNINAGIVK+L   +AK CP A V +I
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAGEDPT-PALENADVVLISAGVARKPGMDRSDLFNINAGIVKNLIEKVAKTCPKACVGII 117          
The following BLAST results are available for this feature:
BLAST of FC930915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
MDHG1_ARATH1.255e-4068.64Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG1_BRANA2.141e-4068.64Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHM_MACFA3.091e-3959.71Malate dehydrogenase, mitochondrial OS=Macaca fasc... [more]
MDHM_CAEEL5.830e-3857.55Probable malate dehydrogenase, mitochondrial OS=Ca... [more]
MDHM_SCHPO9.308e-3661.54Malate dehydrogenase, mitochondrial OS=Schizosacch... [more]
MDHP_YEAST1.643e-3258.26Malate dehydrogenase, peroxisomal OS=Saccharomyces... [more]
MDHM_YEAST1.065e-3157.03Malate dehydrogenase, mitochondrial OS=Saccharomyc... [more]
MDH_HAES24.047e-3164.10Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDHM_SCHMA5.285e-3157.80Malate dehydrogenase, mitochondrial (Fragment) OS=... [more]
MDH_HAES19.015e-3164.10Malate dehydrogenase OS=Haemophilus somnus (strain... [more]

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Properties
Property NameValue
Genbank descriptionC34110D08EF PostHarvP1 Citrus clementina cDNA clone C34110D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930915 ID=FC930915; Name=FC930915; organism=Citrus clementina; type=EST; length=524bp
GTCTTCTTTAACCTCTCACCTTTCTCGTTCAACGGTCTCTTCATTATCAT
TTCTCTCCCTGCCTCTCTAAAGTCTAAACCCGCAACAAAAATGAGATCTT
CAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGC
TACTCCTCCGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGC
TGGCGGGATCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTG
TCTCCAGGCTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCT
GATGTCGGCCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAA
TGATCAGCTTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGG
CTGGTGTTCCCAGGAAACCGGGTATGACGCGTGATGATCTATTTAACATC
AATGCTGGAATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCC
CAATGCAATTGTTAACATGATTAG
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