FC930915

Overview
NameFC930915
Unique NameFC930915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_RHOP5 (Malate dehydrogenase OS=Rhodopseudomonas palustris (strain BisA53) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++G+ G IG  LA L+ L  L   + ++DIA     G A D+   +               +AL+ + V I+ AGVPRKPGM+RDDL +IN  +++ + + I KY PNA V
Sbjct:    5 KIALIGS-GQIGGTLAHLVGLKEL-GDVVMFDIAEGIPQGKALDIAQSSPVDGFDAKFTGANSYEALDGASVCIVTAGVPRKPGMSRDDLLSINLKVMEQVGAGIKKYAPNAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_RHISN (Malate dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11
Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG-HINTRSEVAGY---MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++G+ G IG  LA L  L  L   + L+DIA+  G+    G  I   S V G+   +       A+E +DV I+ AGVPRKPGM+RDDL  IN  +++ + + I KY PNA V
Sbjct:    5 KIALIGS-GMIGGTLAHLAGLKEL-GDIVLFDIAD--GIPQGKGLDIAQSSPVEGFDATLTGASDYAAIEGADVCIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPNAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_OCHA4 (Malate dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG-HINTRSEVAG----YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++G+ G IG  LA L  L  L   + L+DIA   G+    G  I   S V G    Y G +    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P A V
Sbjct:    5 KIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAE--GIPQGKGLDIAESSPVDGFDAKYTGANDYA-AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_NEOSM (Malate dehydrogenase OS=Neorickettsia sennetsu (strain Miyayama) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KV+++GA G IG  LA L+    L S + L D+      G A DV            +      + ++ S V+II AG+PRKPGMTR++L ++NA ++K++   I K+ P A V ++
Sbjct:    2 KVSLIGA-GNIGGTLAYLIASKKLASEVELIDVNGDLARGKALDVSQTLPLIGYTMKINGSANMERIKGSSVIIITAGIPRKPGMTREELIDVNAVVMKEVGEKIKKFAPKAFVIVV 117          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_HELHP (Malate dehydrogenase OS=Helicobacter hepaticus GN=mdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11
Identity = 34/117 (29.06%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALY--DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            K+A++G +G +G  +A L  +  +   + L+  DI    GV  D+       ++   +      + + +S+VVII AG PR P MTR+DL   NA I++++ S +A+  P +++ ++
Sbjct:    4 KIAIIGGSGNVGSHIAFLGAMRHIAKEILLFSNDIPRCKGVGLDISQAAAIFDIPILIKGCNSYEEIAESEVVIITAGFPRTPNMTRNDLLLKNASIIQEISSNVARIAPQSLLIVV 120          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_BART1 (Malate dehydrogenase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  175 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            +K+A++G+ G IG  LA ++ L  L   + L+DI+     G A D+   +       ++      +A+E +DVVI+ AGV RKPGM+RDDL  IN  +++ + + I KY P+A V
Sbjct:    4 KKIALIGS-GMIGGTLAHIIGLKEL-GDVVLFDISEGMPQGKALDIAESSPIDGFDVHLKGANAYEAIEGADVVIVTAGVARKPGMSRDDLLGINLKVMEQVGAGIKKYAPSAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_THEAC (Malate dehydrogenase OS=Thermoplasma acidophilum GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 41/123 (33.33%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  175 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVG----HINTRSEVAGYMGNDQLG-QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            +K++V+GA G +G  +A  +    L   + L+D+ +    G A D+     H     +V G+  +D+   + +E SDV+++ AG+ RKPGM+RDDLF+ N  I+ D+   I KY P++I+ ++
Sbjct:    4 KKISVIGA-GNVGATVAQFLAAKQL-GDVYLFDVVDGIPEGKALDIQEGAPHWRYDLDVVGFSTSDETKYKNMEGSDVIVVTAGLARKPGMSRDDLFDKNVEIISDVSRNIKKYSPDSIIVVV 124          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_RHOSK (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++GA G IG  LA L  +  L   + L+DIA  TP G A D+            M      + +  +DV I+ AGVPRKPGM+RDDL  IN  ++K +   I  + PNA V
Sbjct:    5 KIALIGA-GQIGGTLAHLAAIKEL-GDVVLFDIAEGTPQGKALDIAQSGPSEGFDAVMKGANSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHAPNAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_RHOS4 (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=mdh PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++GA G IG  LA L  +  L   + L+DIA  TP G A D+            M      + +  +DV I+ AGVPRKPGM+RDDL  IN  ++K +   I  + PNA V
Sbjct:    5 KIALIGA-GQIGGTLAHLAAIKEL-GDVVLFDIAEGTPQGKALDIAQSGPSEGFDAVMKGANSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHAPNAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_RHOS1 (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++GA G IG  LA L  +  L   + L+DIA  TP G A D+            M      + +  +DV I+ AGVPRKPGM+RDDL  IN  ++K +   I  + PNA V
Sbjct:    5 KIALIGA-GQIGGTLAHLAAIKEL-GDVVLFDIAEGTPQGKALDIAQSGPSEGFDAVMKGANSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHAPNAFV 116          
The following BLAST results are available for this feature:
BLAST of FC930915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
MDH_RHOP56.075e-1137.72Malate dehydrogenase OS=Rhodopseudomonas palustris... [more]
MDH_RHISN6.075e-1141.38Malate dehydrogenase OS=Rhizobium sp. (strain NGR2... [more]
MDH_OCHA46.075e-1142.74Malate dehydrogenase OS=Ochrobactrum anthropi (str... [more]
MDH_NEOSM6.075e-1135.04Malate dehydrogenase OS=Neorickettsia sennetsu (st... [more]
MDH_HELHP6.075e-1129.06Malate dehydrogenase OS=Helicobacter hepaticus GN=... [more]
MDH_BART16.075e-1136.52Malate dehydrogenase OS=Bartonella tribocorum (str... [more]
MDH_THEAC7.935e-1133.33Malate dehydrogenase OS=Thermoplasma acidophilum G... [more]
MDH_RHOSK7.935e-1139.47Malate dehydrogenase OS=Rhodobacter sphaeroides (s... [more]
MDH_RHOS47.935e-1139.47Malate dehydrogenase OS=Rhodobacter sphaeroides (s... [more]
MDH_RHOS17.935e-1139.47Malate dehydrogenase OS=Rhodobacter sphaeroides (s... [more]

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Properties
Property NameValue
Genbank descriptionC34110D08EF PostHarvP1 Citrus clementina cDNA clone C34110D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930915 ID=FC930915; Name=FC930915; organism=Citrus clementina; type=EST; length=524bp
GTCTTCTTTAACCTCTCACCTTTCTCGTTCAACGGTCTCTTCATTATCAT
TTCTCTCCCTGCCTCTCTAAAGTCTAAACCCGCAACAAAAATGAGATCTT
CAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGC
TACTCCTCCGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGC
TGGCGGGATCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTG
TCTCCAGGCTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCT
GATGTCGGCCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAA
TGATCAGCTTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGG
CTGGTGTTCCCAGGAAACCGGGTATGACGCGTGATGATCTATTTAACATC
AATGCTGGAATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCC
CAATGCAATTGTTAACATGATTAG
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