FC930915
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_RHOP5 (Malate dehydrogenase OS=Rhodopseudomonas palustris (strain BisA53) GN=mdh PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11 Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 1 Query: 178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513 K+A++G+ G IG LA L+ L L + ++DIA G A D+ + +AL+ + V I+ AGVPRKPGM+RDDL +IN +++ + + I KY PNA V Sbjct: 5 KIALIGS-GQIGGTLAHLVGLKEL-GDVVMFDIAEGIPQGKALDIAQSSPVDGFDAKFTGANSYEALDGASVCIVTAGVPRKPGMSRDDLLSINLKVMEQVGAGIKKYAPNAFV 116
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_RHISN (Malate dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=mdh PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11 Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 1 Query: 178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG-HINTRSEVAGY---MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513 K+A++G+ G IG LA L L L + L+DIA+ G+ G I S V G+ + A+E +DV I+ AGVPRKPGM+RDDL IN +++ + + I KY PNA V Sbjct: 5 KIALIGS-GMIGGTLAHLAGLKEL-GDIVLFDIAD--GIPQGKGLDIAQSSPVEGFDATLTGASDYAAIEGADVCIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPNAFV 116
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_OCHA4 (Malate dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=mdh PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11 Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 1 Query: 178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG-HINTRSEVAG----YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513 K+A++G+ G IG LA L L L + L+DIA G+ G I S V G Y G + A+E +DVVI+ AGVPRKPGM+RDDL IN +++ + + I KY P A V Sbjct: 5 KIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAE--GIPQGKGLDIAESSPVDGFDAKYTGANDYA-AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFV 116
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_NEOSM (Malate dehydrogenase OS=Neorickettsia sennetsu (strain Miyayama) GN=mdh PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11 Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 1 Query: 178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522 KV+++GA G IG LA L+ L S + L D+ G A DV + + ++ S V+II AG+PRKPGMTR++L ++NA ++K++ I K+ P A V ++ Sbjct: 2 KVSLIGA-GNIGGTLAYLIASKKLASEVELIDVNGDLARGKALDVSQTLPLIGYTMKINGSANMERIKGSSVIIITAGIPRKPGMTREELIDVNAVVMKEVGEKIKKFAPKAFVIVV 117
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_HELHP (Malate dehydrogenase OS=Helicobacter hepaticus GN=mdh PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11 Identity = 34/117 (29.06%), Postives = 64/117 (54.70%), Query Frame = 1 Query: 178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALY--DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522 K+A++G +G +G +A L + + + L+ DI GV D+ ++ + + + +S+VVII AG PR P MTR+DL NA I++++ S +A+ P +++ ++ Sbjct: 4 KIAIIGGSGNVGSHIAFLGAMRHIAKEILLFSNDIPRCKGVGLDISQAAAIFDIPILIKGCNSYEEIAESEVVIITAGFPRTPNMTRNDLLLKNASIIQEISSNVARIAPQSLLIVV 120
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_BART1 (Malate dehydrogenase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=mdh PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11 Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = 1 Query: 175 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513 +K+A++G+ G IG LA ++ L L + L+DI+ G A D+ + ++ +A+E +DVVI+ AGV RKPGM+RDDL IN +++ + + I KY P+A V Sbjct: 4 KKIALIGS-GMIGGTLAHIIGLKEL-GDVVLFDISEGMPQGKALDIAESSPIDGFDVHLKGANAYEAIEGADVVIVTAGVARKPGMSRDDLLGINLKVMEQVGAGIKKYAPSAFV 116
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_THEAC (Malate dehydrogenase OS=Thermoplasma acidophilum GN=mdh PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11 Identity = 41/123 (33.33%), Postives = 72/123 (58.54%), Query Frame = 1 Query: 175 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVG----HINTRSEVAGYMGNDQLG-QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522 +K++V+GA G +G +A + L + L+D+ + G A D+ H +V G+ +D+ + +E SDV+++ AG+ RKPGM+RDDLF+ N I+ D+ I KY P++I+ ++ Sbjct: 4 KKISVIGA-GNVGATVAQFLAAKQL-GDVYLFDVVDGIPEGKALDIQEGAPHWRYDLDVVGFSTSDETKYKNMEGSDVIVVTAGLARKPGMSRDDLFDKNVEIISDVSRNIKKYSPDSIIVVV 124
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_RHOSK (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=mdh PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11 Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = 1 Query: 178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513 K+A++GA G IG LA L + L + L+DIA TP G A D+ M + + +DV I+ AGVPRKPGM+RDDL IN ++K + I + PNA V Sbjct: 5 KIALIGA-GQIGGTLAHLAAIKEL-GDVVLFDIAEGTPQGKALDIAQSGPSEGFDAVMKGANSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHAPNAFV 116
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_RHOS4 (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=mdh PE=3 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11 Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = 1 Query: 178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513 K+A++GA G IG LA L + L + L+DIA TP G A D+ M + + +DV I+ AGVPRKPGM+RDDL IN ++K + I + PNA V Sbjct: 5 KIALIGA-GQIGGTLAHLAAIKEL-GDVVLFDIAEGTPQGKALDIAQSGPSEGFDAVMKGANSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHAPNAFV 116
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_RHOS1 (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=mdh PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11 Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = 1 Query: 178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513 K+A++GA G IG LA L + L + L+DIA TP G A D+ M + + +DV I+ AGVPRKPGM+RDDL IN ++K + I + PNA V Sbjct: 5 KIALIGA-GQIGGTLAHLAAIKEL-GDVVLFDIAEGTPQGKALDIAQSGPSEGFDAVMKGANSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHAPNAFV 116 The following BLAST results are available for this feature:
BLAST of FC930915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930915 ID=FC930915; Name=FC930915; organism=Citrus clementina; type=EST; length=524bpback to top |