FC930915

Overview
NameFC930915
Unique NameFC930915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_BRUSU (Malate dehydrogenase OS=Brucella suis GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVAGYMG-----NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++G+ G IG  LA L  L  L   + L+DIA  TP G   D+      S V G+       ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P A V
Sbjct:    5 KIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAE---SSPVDGFDAKFTGANDYA--AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_BRUO2 (Malate dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVAGYMG-----NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++G+ G IG  LA L  L  L   + L+DIA  TP G   D+      S V G+       ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P A V
Sbjct:    5 KIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAE---SSPVDGFDAKFTGANDYA--AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_BRUME (Malate dehydrogenase OS=Brucella melitensis GN=mdh PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVAGYMG-----NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++G+ G IG  LA L  L  L   + L+DIA  TP G   D+      S V G+       ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P A V
Sbjct:    5 KIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAE---SSPVDGFDAKFTGANDYA--AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_BRUMB (Malate dehydrogenase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVAGYMG-----NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++G+ G IG  LA L  L  L   + L+DIA  TP G   D+      S V G+       ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P A V
Sbjct:    5 KIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAE---SSPVDGFDAKFTGANDYA--AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_BRUC2 (Malate dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVAGYMG-----NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++G+ G IG  LA L  L  L   + L+DIA  TP G   D+      S V G+       ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P A V
Sbjct:    5 KIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAE---SSPVDGFDAKFTGANDYA--AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_BRUAB (Malate dehydrogenase OS=Brucella abortus GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVAGYMG-----NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++G+ G IG  LA L  L  L   + L+DIA  TP G   D+      S V G+       ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P A V
Sbjct:    5 KIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAE---SSPVDGFDAKFTGANDYA--AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_BRUA2 (Malate dehydrogenase OS=Brucella abortus (strain 2308) GN=mdh PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVAGYMG-----NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++G+ G IG  LA L  L  L   + L+DIA  TP G   D+      S V G+       ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P A V
Sbjct:    5 KIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAE---SSPVDGFDAKFTGANDYA--AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_BRUA1 (Malate dehydrogenase OS=Brucella abortus (strain S19) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVAGYMG-----NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++G+ G IG  LA L  L  L   + L+DIA  TP G   D+      S V G+       ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P A V
Sbjct:    5 KIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAE---SSPVDGFDAKFTGANDYA--AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_BRASO (Malate dehydrogenase OS=Bradyrhizobium sp. (strain ORS278) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 42/114 (36.84%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++G+ G IG  LA L+ L  L   + ++DIA     G A D+   +       +       +AL+++ V I+ AGVPRKPGM+RDDL +IN  +++ + + I KY P+A V
Sbjct:    5 KIALIGS-GQIGGTLAHLVGLKEL-GDVVMFDIAEGVPQGKALDIAQSSPVDGFDAHYTGANSYEALDNAKVCIVTAGVPRKPGMSRDDLLSINLKVMEQVGAGIKKYAPDAFV 116          
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_BRAJA (Malate dehydrogenase OS=Bradyrhizobium japonicum GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 42/114 (36.84%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  178 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 513
            K+A++G+ G IG  LA L+ L  L   + ++DIA     G A D+   +       +       +AL+++ V I+ AGVPRKPGM+RDDL +IN  +++ + + I KY P+A V
Sbjct:    5 KIALIGS-GQIGGTLAHLIGLKEL-GDVVMFDIAEGVPQGKALDIAQSSPVDGFDAHYTGANSYEALDNAKVCIVTAGVPRKPGMSRDDLLSINLKVMEQVGAGIKKYAPDAFV 116          
The following BLAST results are available for this feature:
BLAST of FC930915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
MDH_BRUSU7.935e-1142.86Malate dehydrogenase OS=Brucella suis GN=mdh PE=3 ... [more]
MDH_BRUO27.935e-1142.86Malate dehydrogenase OS=Brucella ovis (strain ATCC... [more]
MDH_BRUME7.935e-1142.86Malate dehydrogenase OS=Brucella melitensis GN=mdh... [more]
MDH_BRUMB7.935e-1142.86Malate dehydrogenase OS=Brucella melitensis biotyp... [more]
MDH_BRUC27.935e-1142.86Malate dehydrogenase OS=Brucella canis (strain ATC... [more]
MDH_BRUAB7.935e-1142.86Malate dehydrogenase OS=Brucella abortus GN=mdh PE... [more]
MDH_BRUA27.935e-1142.86Malate dehydrogenase OS=Brucella abortus (strain 2... [more]
MDH_BRUA17.935e-1142.86Malate dehydrogenase OS=Brucella abortus (strain S... [more]
MDH_BRASO7.935e-1136.84Malate dehydrogenase OS=Bradyrhizobium sp. (strain... [more]
MDH_BRAJA7.935e-1136.84Malate dehydrogenase OS=Bradyrhizobium japonicum G... [more]

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Properties
Property NameValue
Genbank descriptionC34110D08EF PostHarvP1 Citrus clementina cDNA clone C34110D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930915 ID=FC930915; Name=FC930915; organism=Citrus clementina; type=EST; length=524bp
GTCTTCTTTAACCTCTCACCTTTCTCGTTCAACGGTCTCTTCATTATCAT
TTCTCTCCCTGCCTCTCTAAAGTCTAAACCCGCAACAAAAATGAGATCTT
CAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGC
TACTCCTCCGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGC
TGGCGGGATCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTG
TCTCCAGGCTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCT
GATGTCGGCCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAA
TGATCAGCTTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGG
CTGGTGTTCCCAGGAAACCGGGTATGACGCGTGATGATCTATTTAACATC
AATGCTGGAATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCC
CAATGCAATTGTTAACATGATTAG
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