FC930915

Overview
NameFC930915
Unique NameFC930915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ECO57 (Malate dehydrogenase OS=Escherichia coli O157:H7 GN=mdh PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.461e-29
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ECO55 (Malate dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.461e-29
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ECO45 (Malate dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.461e-29
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ECO27 (Malate dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.461e-29
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ECO24 (Malate dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.461e-29
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_SHESH (Malate dehydrogenase OS=Shewanella sediminis (strain HAW-EB3) GN=mdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.438e-29
Identity = 72/117 (61.54%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  EV G+ G D    ALE +DVV+I AGV RKPGM R DLFNINAGIV++L    A  CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAAACPKALIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_SHELP (Malate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.438e-29
Identity = 72/117 (61.54%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  EV G+ G D    ALE +DVV+I AGV RKPGM R DLFNINAGIV++L    A  CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAATCPKALIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_COLP3 (Malate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=mdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.438e-29
Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ L+LL+K   P  S L+LYD+A   PGVA D+ HI T  +VAG+ G D L  AL  +D+V+IPAG+PRKPGM R DLFN+NAGI+K L   I   CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVAGF-GRDDLNGALTGADIVLIPAGMPRKPGMDRADLFNVNAGIIKVLAEGIVASCPKALVGVI 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_ALISL (Malate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=mdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.438e-29
Identity = 74/117 (63.25%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV RKPGM R DLFNINAGIVK L   IA  CP A + +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVKSLAEKIAVTCPKACIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_VIBPA (Malate dehydrogenase OS=Vibrio parahaemolyticus GN=mdh PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.102e-28
Identity = 74/117 (63.25%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK L   IA  CP A V +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPT-PALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVVCPKACVGII 117
The following BLAST results are available for this feature:
BLAST of FC930915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
MDH_ECO576.461e-2960.68Malate dehydrogenase OS=Escherichia coli O157:H7 G... [more]
MDH_ECO556.461e-2960.68Malate dehydrogenase OS=Escherichia coli (strain 5... [more]
MDH_ECO456.461e-2960.68Malate dehydrogenase OS=Escherichia coli O45:K1 (s... [more]
MDH_ECO276.461e-2960.68Malate dehydrogenase OS=Escherichia coli O127:H6 (... [more]
MDH_ECO246.461e-2960.68Malate dehydrogenase OS=Escherichia coli O139:H28 ... [more]
MDH_SHESH8.438e-2961.54Malate dehydrogenase OS=Shewanella sediminis (stra... [more]
MDH_SHELP8.438e-2961.54Malate dehydrogenase OS=Shewanella loihica (strain... [more]
MDH_COLP38.438e-2958.97Malate dehydrogenase OS=Colwellia psychrerythraea ... [more]
MDH_ALISL8.438e-2963.25Malate dehydrogenase OS=Aliivibrio salmonicida (st... [more]
MDH_VIBPA1.102e-2863.25Malate dehydrogenase OS=Vibrio parahaemolyticus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110D08EF PostHarvP1 Citrus clementina cDNA clone C34110D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930915 ID=FC930915; Name=FC930915; organism=Citrus clementina; type=EST; length=524bp
GTCTTCTTTAACCTCTCACCTTTCTCGTTCAACGGTCTCTTCATTATCAT
TTCTCTCCCTGCCTCTCTAAAGTCTAAACCCGCAACAAAAATGAGATCTT
CAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGC
TACTCCTCCGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGC
TGGCGGGATCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTG
TCTCCAGGCTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCT
GATGTCGGCCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAA
TGATCAGCTTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGG
CTGGTGTTCCCAGGAAACCGGGTATGACGCGTGATGATCTATTTAACATC
AATGCTGGAATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCC
CAATGCAATTGTTAACATGATTAG
back to top