FC930915

Overview
NameFC930915
Unique NameFC930915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_VIBHB (Malate dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.102e-28
Identity = 74/117 (63.25%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK L   IA  CP A V +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPT-PALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVVCPTACVGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_VIBFM (Malate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.102e-28
Identity = 74/117 (63.25%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV RKPGM R DLFNINAGIVK L   IA  CP A + +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVKSLTEKIAVTCPKACIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_VIBF1 (Malate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.102e-28
Identity = 74/117 (63.25%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV RKPGM R DLFNINAGIVK L   IA  CP A + +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVKSLTEKIAVTCPKACIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_YERPY (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.439e-28
Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV RKPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_YERPS (Malate dehydrogenase OS=Yersinia pseudotuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.439e-28
Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV RKPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_YERPP (Malate dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.439e-28
Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV RKPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_YERPN (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.439e-28
Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV RKPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_YERPG (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.439e-28
Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV RKPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_YERPE (Malate dehydrogenase OS=Yersinia pestis GN=mdh PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.439e-28
Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV RKPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC930915 vs. ExPASy Swiss-Prot
Match: MDH_YERPB (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.439e-28
Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:  178 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 522
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV RKPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
The following BLAST results are available for this feature:
BLAST of FC930915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
MDH_VIBHB1.102e-2863.25Malate dehydrogenase OS=Vibrio harveyi (strain ATC... [more]
MDH_VIBFM1.102e-2863.25Malate dehydrogenase OS=Vibrio fischeri (strain MJ... [more]
MDH_VIBF11.102e-2863.25Malate dehydrogenase OS=Vibrio fischeri (strain AT... [more]
MDH_YERPY1.439e-2858.97Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPS1.439e-2858.97Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPP1.439e-2858.97Malate dehydrogenase OS=Yersinia pestis (strain Pe... [more]
MDH_YERPN1.439e-2858.97Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERPG1.439e-2858.97Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERPE1.439e-2858.97Malate dehydrogenase OS=Yersinia pestis GN=mdh PE=... [more]
MDH_YERPB1.439e-2858.97Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]

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Properties
Property NameValue
Genbank descriptionC34110D08EF PostHarvP1 Citrus clementina cDNA clone C34110D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930915 ID=FC930915; Name=FC930915; organism=Citrus clementina; type=EST; length=524bp
GTCTTCTTTAACCTCTCACCTTTCTCGTTCAACGGTCTCTTCATTATCAT
TTCTCTCCCTGCCTCTCTAAAGTCTAAACCCGCAACAAAAATGAGATCTT
CAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGC
TACTCCTCCGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGC
TGGCGGGATCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTG
TCTCCAGGCTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCT
GATGTCGGCCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAA
TGATCAGCTTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGG
CTGGTGTTCCCAGGAAACCGGGTATGACGCGTGATGATCTATTTAACATC
AATGCTGGAATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCC
CAATGCAATTGTTAACATGATTAG
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