FC930920

Overview
NameFC930920
Unique NameFC930920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC930920 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 50/173 (28.90%), Postives = 77/173 (44.51%), Query Frame = 1 
Query:  130 GWTDAHATFYXXXXXXXXXXXXXXY-GNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKG---GIRFTINGHSYFNLVLITNVGGAGDVRAVSI 615
            GW+   AT+Y              Y G++    + +  AA S +++ +G  CG+C+++KC  +P  C    + V  T+ C          GG C     HFDLS   F  +A+         AG +PV Y RVPC  +G     R     + Y+  VL+ +  G GD+ AV +
Sbjct:   37 GWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CSGKPVTVVLTDLC---------PGGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDL 199
The following BLAST results are available for this feature:
BLAST of FC930920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
EXB14_ORYSJ6.129e-1328.90Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionC34110E01EF PostHarvP1 Citrus clementina cDNA clone C34110E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930920 ID=FC930920; Name=FC930920; organism=Citrus clementina; type=EST; length=654bp
ATCACTCACAGCAAGAACCTCTCTTTCTCTCTTAAAAAGATACGCAAGCA
AAAGGGTTTCAGGAACATGGCATTTCTTGGGCTGCTGTTGTTGGGGATTC
TTTCTTTAGTCTCATCTGTTTATGGCCAGGGATGGACTGATGCTCATGCC
ACTTTTTATGGTGGGGGTGATGCCTCTGGTACAATGGGTGGCGCTTGTGG
GTATGGAAACTTATACAGCGAGGGATATGGGACAAACACAGCAGCTCTGA
GCACTGCACTTTTCAACAATGGCATGAGCTGTGGGGCTTGTTTTGAGATC
AAGTGTGTTAATGACCCAAGATGGTGCCGTCCGGGCTCCATTTTTGTTAC
TGCCACAAATTTTTGCCCTCCAAATAATGCTCTCCCAAACAATGCCGGTG
GCTGGTGCAATCCTCCCCAGCAACATTTTGACCTCTCTCAGCCTGTGTTT
GAACAAATTGCTCAGTACAAAGCTGGGATAGTACCTGTGTCTTACAGAAG
GGTTCCATGCAGTAGGAAGGGAGGCATCAGATTCACGATCAACGGCCATT
CTTACTTCAACTTAGTCCTAATCACAAACGTCGGAGGCGCTGGTGATGTG
CGTGCTGTTTCAATCAAGGGTCAAGAACTGATTGGCAACCCATGTCAAGG
AACT
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