FC930921

Overview
NameFC930921
Unique NameFC930921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930921 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 59/204 (28.92%), Postives = 92/204 (45.10%), Query Frame = 3
Query:  132 TIPERFVRDLTE-----RPSSLATALSPPGGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKAETFE-----EMFG--VCCAAVRMNYY 707
            T+PE F   LT      RPSS  +  +    IP+I+LS           +    +  A + WG FQ+ +HGI   LL++IE ++K  F +P E K +       V GYG+  +    +K  W   F +  + +      LWP    ++   ++ Y  ++ KL   LL  +  SLG+  E  E     E  G  V   A+R+N+Y
Sbjct:   18 TLPESFTWKLTAADSLLRPSSAVSFDAVEESIPVIDLSN---------PDVTTLIGDASKTWGAFQIANHGISQKLLDDIESLSKTLFDMPSERKLEAASSDKGVSGYGEPRISPFFEKKMWSEGFTIADDSYRNHFNTLWPHDHTKYCGIIQEYVDEMEKLASRLLYCILGSLGVTVEDIEWAHKLEKSGSKVGRGAIRLNHY 212          
BLAST of FC930921 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 55/188 (29.26%), Postives = 89/188 (47.34%), Query Frame = 3
Query:  162 TERPSSLATALSPPGGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMF-ALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKAETFE-----EMFGVCCAAVRMNYY 707
            T +   L +A +    +P+I+LS        + H   L +  AC  WG FQ+ +HG+   LL++IE +    F LP++ K K       V GYG A + S   K  W   F  +G   H  R  KLWP+   ++ E +E Y   ++KL   L+ +   SLG++ +  +       F    A +++N+Y
Sbjct:   34 TPKDDLLFSASASDETLPLIDLS--------DIHVATL-VGHACTTWGAFQITNHGVPSRLLDDIEFLTGSLFRLPVQRKLKAARSENGVSGYGVARIASFFNKKMWSEGFTVIGSPLHDFR--KLWPSHHLKYCEIIEEYEEHMQKLAAKLMWFALGSLGVEEKDIQWAGPNSDFQGTQAVIQLNHY 210          
BLAST of FC930921 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 50/150 (33.33%), Postives = 67/150 (44.67%), Query Frame = 3
Query:  204 GGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKAE 653
            G IP+I+LS      + E H     L  ACEEWG F + DHG+  +LL N++   K  F LP+  K      P    GYG   +     KL W   F++           LWP   AEF   +E Y + +  L   L+  +  SLGL  E
Sbjct:   45 GPIPVISLS------NPEEHGL---LRQACEEWGVFHITDHGVSHSLLHNVDCQMKRLFSLPMHRKILAVRSPDESTGYGVVRISMFYDKLMWSEGFSVMGSSLRRHATLLWPDDHAEFCNVMEEYQKAMDDLSHRLISMLMGSLGLTHE 185          
BLAST of FC930921 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 48/200 (24.00%), Postives = 89/200 (44.50%), Query Frame = 3
Query:  129 STIPERFVRDLTERPSSLATALSPPGGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQC-------LLKYVAISLGLKAETFEEMFGVCCAAVRMNYY 707
            + IP +F+    E+PS     L     +P+I+L  L+           L ++ AC++ GFF V++HGI   L+ +  +    FF +PL EK++     G   GY  +F    + KL W    +        R+  +            + + +  ++ C+        +++ + +SLG+K + F E F    + +R+NYY
Sbjct:   38 ANIPNQFIWPDDEKPSINVLELD----VPLIDLQNLLSDPSSTLDASRL-ISEACKKHGFFLVVNHGISEELISDAHEYTSRFFDMPLSEKQRVLRKSGESVGYASSFTGRFSTKLPWKETLSFRFCDDMSRSKSVQDYFCDALGHGFQPFGKVYQEYCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSIMRLNYY 232          
BLAST of FC930921 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 52/208 (25.00%), Postives = 88/208 (42.31%), Query Frame = 3
Query:  129 STIPERFVRDLTERPSSLATALSPPGGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPA---------------EFSETLETYSRDVRKLCQCLLKYVAISLGLKAETFEEMFGVCCAAVRMNYY 707
            S IP +F+    E P+  A   +    +P+IN+  ++ G+          +  ACE  GFFQV++HGI+  LL +  +   +FF +PL EK++    PG   GY  +F      KL W    +           +  P+ PA                  E    Y  ++ +L   +++ +  SLG+    +   F    + +R+NYY
Sbjct:   15 SDIPSQFIWPEGESPTPDA---AEELHVPLINIGGMLSGDAAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSF----------RSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYY 209          
BLAST of FC930921 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 48/153 (31.37%), Postives = 76/153 (49.67%), Query Frame = 3
Query:  213 PIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKAETFEEMF 671
            PIINL KL   N DE  N +  +  ACE WGFF++++HGI   +++ +EK+ K  +   +E++ K       V   G   V +E   LDW + F L   P    N    P    E+ E +  +++ + KL + LL  +  +LGL+    +  F
Sbjct:    5 PIINLEKL---NGDERANTMEMIKDACENWGFFELVNHGIPHEVMDTVEKMTKGHYKKCMEQRFK-----ELVASKGLEAVQAEVTDLDWESTFFLRHLP--TSNISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAF 147          
BLAST of FC930921 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 46/153 (30.07%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  213 PIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKAETFEEMF 671
            PIINL KL   N +E    +  +  ACE WGFF+ ++HGI L LL+ +EK+ K+ +   +EE+ K      +++  G   + SE   +DW + F L   P  + N    P    ++   ++ ++  + KL + LL  +  +LGL+    +++F
Sbjct:    5 PIINLEKL---NGEERAITMEKIKDACENWGFFECVNHGISLELLDKVEKMTKEHYKKCMEERFK-----ESIKNRGLDSLRSEVNDVDWESTFYLKHLP--VSNISDVPDLDDDYRTLMKDFAGKIEKLSEELLDLLCENLGLEKGYLKKVF 147          
BLAST of FC930921 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 55/206 (26.70%), Postives = 86/206 (41.75%), Query Frame = 3
Query:  135 IPERFVRDLTERPSSLATALSPPGGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFAL------------GVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGL---KAETFEEMFGVCCAAVRMNYY 707
            IP +F+    E P S+A        +  + ++ +  G   E  + +  +  ACE  GFF V++HGIE  LLE   +    FF LPL EK++     G   GY  +F      KL W    +             GV  + +R  KL         E    Y  ++ +L   L++ +  SLG+   +   F   F    + +R+NYY
Sbjct:   24 IPSQFIWPAEESPGSVA--------VEELEVALIDVGAGAERSSVVRQVGEACERHGFFLVVNHGIEAALLEEAHRCMDAFFTLPLGEKQRAQRRAGESCGYASSFTGRFASKLPWKETLSFRYSSAGDEEGEEGVGEYLVR--KLGAEHGRRLGEVYSRYCHEMSRLSLELMEVLGESLGIVGDRRHYFRRFFQRNDSIMRLNYY 219          
BLAST of FC930921 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 49/180 (27.22%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  201 PGGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNP--KLWPAKPAE---FSETLETYSRDVRKLCQCLLKYVAISLGL------KAETFEEMFGVCCAAVRMNYY 707
            P  +P++++        D F  E + LA   ++WG F ++ HG+ L+LL  +E      F LP  EK +    PG   GYG   + S   K  W   +     P  +R+   KLWP    +   F   +E + R++R L   LL+   ++LGL        E+ +++     A + +N+Y
Sbjct:   46 PDAVPVVDM-------RDPFAAEAVGLAA--QDWGAFLLVGHGVPLDLLVRVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTF--SPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWY 214          
BLAST of FC930921 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 45/153 (29.41%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  213 PIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKAETFEEMF 671
            P+++LS +   N +E    +  +  ACE WGFF++++HG+   LL+ +EK+ KD +   +E++ K       V   G   V SE   LDW + F L   P    N    P    E+ +T++ ++ ++ KL + LL  +  +LGL+    +++F
Sbjct:    5 PVVDLSLV---NGEERAATLEKINDACENWGFFELVNHGMSTELLDTVEKMTKDHYKKTMEQRFK-----EMVAAKGLDDVQSEIHDLDWESTFFLRHLPS--SNISEIPDLEEEYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKVF 147          
The following BLAST results are available for this feature:
BLAST of FC930921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
G3OX4_ARATH1.415e-1328.92Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
G3OX2_ARATH3.153e-1329.26Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G3OX3_ARATH1.565e-1233.33Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
GAOX1_ARATH7.767e-1224.00Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
GAO1A_WHEAT1.014e-1125.00Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
ACCO1_SOLLC1.325e-1131.371-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
ACCO1_ARATH1.730e-1130.071-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
GAOX1_ORYSJ2.951e-1126.70Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
G3O23_WHEAT2.951e-1127.22Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
ACCO1_MALDO2.951e-1129.411-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]

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Properties
Property NameValue
Genbank descriptionC34110E02EF PostHarvP1 Citrus clementina cDNA clone C34110E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930921 ID=FC930921; Name=FC930921; organism=Citrus clementina; type=EST; length=707bp
TCATATATTTTTCTTTAGTTGCAGTTAGATTATCGCTTCAAAACTCTGTT
TCCATGGCTCCAGTACCAACTTTTCCCGTCAAAGTTGGTCAAATAGATGA
TGTTCAAGAGCTGAGAAAAGTCGAACCTAGCACAATTCCTGAAAGATTTG
TTAGAGACTTGACTGAAAGGCCATCGTCACTGGCTACAGCTCTTTCTCCA
CCTGGTGGCATTCCCATCATCAACCTCTCAAAACTCATGAAGGGCAACCA
CGATGAATTTCACAATGAAATTTTAAACCTCGCAACTGCCTGCGAAGAGT
GGGGATTCTTTCAGGTGATTGACCATGGGATTGAACTGAACTTACTCGAG
AACATAGAGAAGGTGGCCAAAGATTTTTTCATGCTACCTTTAGAAGAGAA
AAAGAAGTACCCCATGCTACCAGGGACAGTTCAAGGATATGGGCAAGCTT
TTGTGTTCTCGGAGAACCAAAAACTTGATTGGTGCAACATGTTTGCCCTT
GGTGTCGAGCCTCACTTTATCAGGAACCCAAAACTCTGGCCAGCAAAGCC
AGCTGAGTTCAGTGAAACTCTAGAGACTTACTCAAGAGATGTGAGAAAAC
TTTGCCAGTGTCTGCTCAAGTACGTAGCAATAAGCCTTGGCTTGAAAGCA
GAAACTTTTGAAGAAATGTTTGGGGTTTGCTGTGCAGCTGTGAGGATGAA
CTACTAC
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