FC930921

Overview
NameFC930921
Unique NameFC930921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930921 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 45/183 (24.59%), Postives = 79/183 (43.17%), Query Frame = 3
Query:  129 STIPERFVRDLTERPSSLATALS---------PPGGIPIINLSKLMKGNHDEFHNE--ILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLP--GTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISL 638
            S IP  +VR   ER + L  A               IP++++S  +  +  +   +  +  +  A  +WG   +  HGI   L++ +      FF LP+++K+ Y   P  G +QGYG     +   + +W +     V P  + +  LWPA P ++      + R  R L   LL  +++ L
Sbjct:   23 SAIPPEYVRPADER-AGLGDAFDLARTHANDHTAPRIPVVDISPFLDSSSQQQQRDECVEAVRAAAADWGVMHIAGHGIPAELMDRLRAAGTAFFALPVQDKEAYANDPAAGRLQGYGSRLATNTCGQREWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILSMGL 204          
BLAST of FC930921 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 45/150 (30.00%), Postives = 74/150 (49.33%), Query Frame = 3
Query:  207 GIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPK---LWPAKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLK 647
            GIP+++L+      H +  N I+N   AC ++GFF++++HG+ L L+ N+E  A  FF     EK +    P    GYG   +   N  + W     L   P  I +PK   ++   P  F   +E Y   V+ +C  +L+ +A  LG++
Sbjct:   26 GIPVVDLT------HPDAKNLIVN---ACRDFGFFKLVNHGVPLELMANLENEALRFFKKSQSEKDRAG--PPDPFGYGSKRI-GPNGDVGWVEYLLLNTNPDVI-SPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIR 162          
The following BLAST results are available for this feature:
BLAST of FC930921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
LDOX_MAIZE3.855e-1124.59Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
G2OX_PHACN8.587e-1130.00Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]

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Properties
Property NameValue
Genbank descriptionC34110E02EF PostHarvP1 Citrus clementina cDNA clone C34110E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930921 ID=FC930921; Name=FC930921; organism=Citrus clementina; type=EST; length=707bp
TCATATATTTTTCTTTAGTTGCAGTTAGATTATCGCTTCAAAACTCTGTT
TCCATGGCTCCAGTACCAACTTTTCCCGTCAAAGTTGGTCAAATAGATGA
TGTTCAAGAGCTGAGAAAAGTCGAACCTAGCACAATTCCTGAAAGATTTG
TTAGAGACTTGACTGAAAGGCCATCGTCACTGGCTACAGCTCTTTCTCCA
CCTGGTGGCATTCCCATCATCAACCTCTCAAAACTCATGAAGGGCAACCA
CGATGAATTTCACAATGAAATTTTAAACCTCGCAACTGCCTGCGAAGAGT
GGGGATTCTTTCAGGTGATTGACCATGGGATTGAACTGAACTTACTCGAG
AACATAGAGAAGGTGGCCAAAGATTTTTTCATGCTACCTTTAGAAGAGAA
AAAGAAGTACCCCATGCTACCAGGGACAGTTCAAGGATATGGGCAAGCTT
TTGTGTTCTCGGAGAACCAAAAACTTGATTGGTGCAACATGTTTGCCCTT
GGTGTCGAGCCTCACTTTATCAGGAACCCAAAACTCTGGCCAGCAAAGCC
AGCTGAGTTCAGTGAAACTCTAGAGACTTACTCAAGAGATGTGAGAAAAC
TTTGCCAGTGTCTGCTCAAGTACGTAGCAATAAGCCTTGGCTTGAAAGCA
GAAACTTTTGAAGAAATGTTTGGGGTTTGCTGTGCAGCTGTGAGGATGAA
CTACTAC
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