FC930928
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR_GIBFU (Polygalacturonase OS=Gibberella fujikuroi GN=PGA PE=1 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.024e-34 Identity = 76/211 (36.02%), Postives = 114/211 (54.03%), Query Frame = 2 Query: 2 FSIDGAKELTLNGVTVDNLDGDSQGG--------HNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGSNIHFTGAQCTXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSIRGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGACSNWSWGDVNVQGGRTSEKC 610 F I G+ +LT++G+ +DN GD HNTD FD+ SS+ V + + V+NQDDC+A+ SG+NI + C+ ++DN+VDGV + + NS NG R+KS G TG+I VTY++I L+ I+ YGV ++QDY N V GTV S A + +ILC +G+CS +++ + GG + C Sbjct: 154 FDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSGTNIVVSNMYCSGGHGLSIGSVGGKSDNVVDGVQFLSSQVVNSQNGCRIKSNSGATGTINNVTYQNIALTNISTYGVDVQQDYLNGGPTGKPTNGVKISNIKFIKVTGTVASSAQDWFILCGDGSCSGFTFSGNAITGGGKTSSC 364
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR_PHACE (Polygalacturonase OS=Phaedon cochleariae PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.853e-30 Identity = 74/214 (34.58%), Postives = 106/214 (49.53%), Query Frame = 2 Query: 5 SIDGAKELTLNGVTVDNLDGDSQG-GHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGSNIHFTGAQCTXXXXXXXXXXXXR--ADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSI--RGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTV-NSGATNVYILCAEGACSNWSWGDVNVQGGRTSEKCKGIPGG 628 SID + LTL+G +D GD GHNTD FD+ +++ + I V NQDDC+A+N G+N F C+ N V VT N ++ S NG+ +K+ Y G R +TY +I + GI Y V +EQDYK + V GT+ +T VYI+CA+GACSN++W V+ +G + C +P G Sbjct: 151 SIDHSGPLTLSGWNIDVSQGDKDALGHNTDGFDINTTDQLTIEDTVVKNQDDCIAVNQGTNFLFNNLDCSGGHGLSLSVGTSHEIIKNTVRNVTFSNSVVRKSRNGIHIKTTYQFRGRYPWRMLTYSNIAMEGIWKYAVNVEQDYKKGKPTGIPVGNIPIKGLHLEKVTGTLTGEESTPVYIICADGACSNFNWSGVSFEGASHASNCSYVPTG 364
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14 Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 2 Query: 35 NGVTVDNLDGDS-QGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSG-SNIHFTGAQCTXXXXXXXXXXXXRADNI-VDGVTIENCNIKNSMNGVRVKSIYGTTGSIRGVTYKDITLSGITDYGVVIEQDY 424 N VT+ +L ++ + NTD DVG+S+ V I + DDC+AINSG SNIH +G C + V+ V ++NCN + +MNG R+K+ G +G R +T+ ITL + + ++I+Q Y Sbjct: 170 NYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNV-ENPIIIDQFY 301
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13 Identity = 53/188 (28.19%), Postives = 87/188 (46.28%), Query Frame = 2 Query: 83 NTDAFDVGSSNGVYIISPTVHNQDDCLAINSGS-NIHFTGAQC-TXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGT-TGSIRGVTYKDITLSGITDYGVVIEQDY-KNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEG-ACSNWSWGDVNVQ----GGRTSEKCKGI 619 NTD VG S GV I + + DDC++I GS N+ T C + V G+T++ C +MNGVRVK+ + G+ +T++D+T++ + + V+++Q+Y NN+ GT ++G V I C+ G CSN G++N+ GG + C + Sbjct: 177 NTDGIHVGISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRGITVKGCTFSGTMNGVRVKTWPNSPPGAATDLTFQDLTMNNVQN-PVILDQEYCPYGQCSRQAPSRIKLSNINFNNIRGT-STGKVAVVIACSHGMPCSNMKIGEINLSYRGAGGPATSTCSNV 362
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11 Identity = 53/209 (25.36%), Postives = 93/209 (44.50%), Query Frame = 2 Query: 14 GAKELTLNGVTVDNLDGDSQGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGS-NIHFTGAQC-TXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSI--RGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGA-CSNWSWGDVNVQ--GGRTSEKCKGI 619 G K +T +G T+ GDS NTD +G S V I++ + DDC++I GS I G C + V+G+T++NC + + NGVR+K+ G+I + ++DIT++ + + ++ ++ Y NV GT + A V ++C+ C +V+++ G T+ KC + Sbjct: 177 GCKNITFDGFTI-TAPGDSP---NTDGIHMGKSTDVKILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKKNPSKIKLSKISFKNVKGT-SGTAEGVVLICSSAVPCDGVELNNVDLKFNGAPTTAKCTNV 380
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11 Identity = 57/228 (25.00%), Postives = 101/228 (44.30%), Query Frame = 2 Query: 5 SIDGAKELTLNGVTVDNLDGDSQGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGS-NIHFTGAQC-TXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGT-TGSIRGVTYKDITLSGITDYGVVIEQDY-KNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGA-CSNWSWGDVNVQGGRTSEKCKGIPGGAKVLIAH*QVESSCT 673 +I K +TL+ + +D NTD +G SNGV +I + DDC++I G+ N+ +C + V GVT+ C IKN+ NGVR+K+ G+ G + ++DIT+ ++ V+I+Q+Y I + GT ++ V ++C++G C+N + D+N+ K +++ V ++CT Sbjct: 216 NILNCKNITLSDIGIDA----PPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVS-LPVLIDQEYCPYGHCKAGVPSQVKLSDVTIKGIKGT-SATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNIKPILSGKLVPAACT 437 The following BLAST results are available for this feature:
BLAST of FC930928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930928 ID=FC930928; Name=FC930928; organism=Citrus clementina; type=EST; length=689bpback to top |