FC930928

Overview
NameFC930928
Unique NameFC930928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR_GIBFU (Polygalacturonase OS=Gibberella fujikuroi GN=PGA PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.024e-34
Identity = 76/211 (36.02%), Postives = 114/211 (54.03%), Query Frame = 2
Query:    2 FSIDGAKELTLNGVTVDNLDGDSQGG--------HNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGSNIHFTGAQCTXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSIRGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGACSNWSWGDVNVQGGRTSEKC 610
            F I G+ +LT++G+ +DN  GD            HNTD FD+ SS+ V + +  V+NQDDC+A+ SG+NI  +   C+            ++DN+VDGV   +  + NS NG R+KS  G TG+I  VTY++I L+ I+ YGV ++QDY N                    V GTV S A + +ILC +G+CS +++    + GG  +  C
Sbjct:  154 FDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSGTNIVVSNMYCSGGHGLSIGSVGGKSDNVVDGVQFLSSQVVNSQNGCRIKSNSGATGTINNVTYQNIALTNISTYGVDVQQDYLNGGPTGKPTNGVKISNIKFIKVTGTVASSAQDWFILCGDGSCSGFTFSGNAITGGGKTSSC 364          
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR_PHACE (Polygalacturonase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.853e-30
Identity = 74/214 (34.58%), Postives = 106/214 (49.53%), Query Frame = 2
Query:    5 SIDGAKELTLNGVTVDNLDGDSQG-GHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGSNIHFTGAQCTXXXXXXXXXXXXR--ADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSI--RGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTV-NSGATNVYILCAEGACSNWSWGDVNVQGGRTSEKCKGIPGG 628
            SID +  LTL+G  +D   GD    GHNTD FD+ +++ + I    V NQDDC+A+N G+N  F    C+                 N V  VT  N  ++ S NG+ +K+ Y   G    R +TY +I + GI  Y V +EQDYK                  +  V GT+    +T VYI+CA+GACSN++W  V+ +G   +  C  +P G
Sbjct:  151 SIDHSGPLTLSGWNIDVSQGDKDALGHNTDGFDINTTDQLTIEDTVVKNQDDCIAVNQGTNFLFNNLDCSGGHGLSLSVGTSHEIIKNTVRNVTFSNSVVRKSRNGIHIKTTYQFRGRYPWRMLTYSNIAMEGIWKYAVNVEQDYKKGKPTGIPVGNIPIKGLHLEKVTGTLTGEESTPVYIICADGACSNFNWSGVSFEGASHASNCSYVPTG 364          
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 2
Query:   35 NGVTVDNLDGDS-QGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSG-SNIHFTGAQCTXXXXXXXXXXXXRADNI-VDGVTIENCNIKNSMNGVRVKSIYGTTGSIRGVTYKDITLSGITDYGVVIEQDY 424
            N VT+ +L  ++ +   NTD  DVG+S+ V I    +   DDC+AINSG SNIH +G  C               +   V+ V ++NCN + +MNG R+K+  G +G  R +T+  ITL  + +  ++I+Q Y
Sbjct:  170 NYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNV-ENPIIIDQFY 301          
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 53/188 (28.19%), Postives = 87/188 (46.28%), Query Frame = 2
Query:   83 NTDAFDVGSSNGVYIISPTVHNQDDCLAINSGS-NIHFTGAQC-TXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGT-TGSIRGVTYKDITLSGITDYGVVIEQDY-KNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEG-ACSNWSWGDVNVQ----GGRTSEKCKGI 619
            NTD   VG S GV I +  +   DDC++I  GS N+  T   C                +  V G+T++ C    +MNGVRVK+   +  G+   +T++D+T++ + +  V+++Q+Y                     NN+ GT ++G   V I C+ G  CSN   G++N+     GG  +  C  +
Sbjct:  177 NTDGIHVGISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRGITVKGCTFSGTMNGVRVKTWPNSPPGAATDLTFQDLTMNNVQN-PVILDQEYCPYGQCSRQAPSRIKLSNINFNNIRGT-STGKVAVVIACSHGMPCSNMKIGEINLSYRGAGGPATSTCSNV 362          
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 53/209 (25.36%), Postives = 93/209 (44.50%), Query Frame = 2
Query:   14 GAKELTLNGVTVDNLDGDSQGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGS-NIHFTGAQC-TXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSI--RGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGA-CSNWSWGDVNVQ--GGRTSEKCKGI 619
            G K +T +G T+    GDS    NTD   +G S  V I++  +   DDC++I  GS  I   G  C                +  V+G+T++NC +  + NGVR+K+     G+I    + ++DIT++ + +  ++ ++ Y                     NV GT +  A  V ++C+    C      +V+++  G  T+ KC  +
Sbjct:  177 GCKNITFDGFTI-TAPGDSP---NTDGIHMGKSTDVKILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKKNPSKIKLSKISFKNVKGT-SGTAEGVVLICSSAVPCDGVELNNVDLKFNGAPTTAKCTNV 380          
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 57/228 (25.00%), Postives = 101/228 (44.30%), Query Frame = 2
Query:    5 SIDGAKELTLNGVTVDNLDGDSQGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGS-NIHFTGAQC-TXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGT-TGSIRGVTYKDITLSGITDYGVVIEQDY-KNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGA-CSNWSWGDVNVQGGRTSEKCKGIPGGAKVLIAH*QVESSCT 673
            +I   K +TL+ + +D          NTD   +G SNGV +I   +   DDC++I  G+ N+     +C                +  V GVT+  C IKN+ NGVR+K+  G+  G    + ++DIT+  ++   V+I+Q+Y                    I  + GT ++    V ++C++G  C+N +  D+N+                K +++   V ++CT
Sbjct:  216 NILNCKNITLSDIGIDA----PPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVS-LPVLIDQEYCPYGHCKAGVPSQVKLSDVTIKGIKGT-SATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNIKPILSGKLVPAACT 437          
The following BLAST results are available for this feature:
BLAST of FC930928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PGLR_GIBFU4.024e-3436.02Polygalacturonase OS=Gibberella fujikuroi GN=PGA P... [more]
PGLR_PHACE7.853e-3034.58Polygalacturonase OS=Phaedon cochleariae PE=2 SV=1[more]
PGLR3_ARATH1.590e-1435.34Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR2_PLAAC6.679e-1328.19Exopolygalacturonase (Fragment) OS=Platanus acerif... [more]
PGLR_MEDSA2.806e-1125.36Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
PGLR2_ARATH8.165e-1125.00Exopolygalacturonase clone GBGA483 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC34110E09EF PostHarvP1 Citrus clementina cDNA clone C34110E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930928 ID=FC930928; Name=FC930928; organism=Citrus clementina; type=EST; length=689bp
CTTCAGTATCGATGGCGCTAAGGAGCTTACTCTCAACGGAGTTACCGTCG
ACAACCTCGATGGTGACAGCCAGGGTGGCCACAACACTGACGCATTCGAC
GTCGGCTCCAGCAACGGTGTCTACATCATCAGCCCTACCGTCCACAACCA
GGATGACTGCCTTGCTATCAACTCCGGCTCGAACATCCACTTTACCGGCG
CTCAGTGCACTGGCGGTCACGGTATCTCCATCGGTTCCGTCGGTGGACGC
GCTGACAACATTGTCGACGGTGTCACCATCGAGAACTGCAACATCAAGAA
CTCCATGAACGGTGTCCGCGTCAAGAGTATCTACGGTACCACCGGTTCCA
TCCGGGGCGTCACCTACAAGGATATCACCCTCTCCGGAATCACCGACTAC
GGTGTTGTCATTGAGCAGGACTACAAGAACGGCAGCCCTACCGGAACCCC
CACCGGCGGTGTCCCCATCACTGGTCTGACCATCAACAACGTCCACGGAA
CTGTCAACAGCGGTGCTACCAACGTCTACATTCTGTGTGCCGAGGGTGCT
TGCTCCAACTGGTCCTGGGGTGATGTCAACGTCCAGGGTGGCCGCACTAG
CGAGAAGTGCAAGGGTATCCCCGGCGGTGCTAAAGTGCTAATAGCACACT
GACAGGTTGAGTCGAGTTGTACAGCTTTTGACTCCTTGC
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