FC930930

Overview
NameFC930930
Unique NameFC930930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_TALSN (40S ribosomal protein S1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=rps1 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.060e-62
Identity = 117/180 (65.00%), Postives = 144/180 (80.00%), Query Frame = 2 
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EI+  +AASC L  L  K I EVIGREIEK T  IYPL
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPL 207
[Close]
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_CRYNE (40S ribosomal protein S1 OS=Cryptococcus neoformans GN=RPS1 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.060e-62
Identity = 117/180 (65.00%), Postives = 143/180 (79.44%), Query Frame = 2 
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +WYDIKAPS F  RN GKTLV RTQG K A++ LK RV E+SL DL N++E ++RKI+LR EDV GK+ LT+F+GM+FTTDKLRS+VRKW +L+EA+VDVKTTD + LRLF IGFTKR  NQVK+T YAQ+SQ+++IR KM EIM  +A   DLK LV+KF+ E IGREIEK    IYPL
Sbjct:   28 EWYDIKAPSFFENRNAGKTLVNRTQGLKNANDSLKGRVLELSLADLNNDQEQSFRKIKLRVEDVAGKSCLTSFYGMDFTTDKLRSIVRKWQSLVEAHVDVKTTDGYVLRLFAIGFTKRQSNQVKKTTYAQSSQLKEIRAKMVEIMRREAEGSDLKELVQKFVPESIGREIEKAAKGIYPL 207
[Close]
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PENMQ (40S ribosomal protein S1 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=rps1 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.350e-61
Identity = 117/180 (65.00%), Postives = 143/180 (79.44%), Query Frame = 2 
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +AASC L  L  K I EVIGREIEK T  IYPL
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAGSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPL 207
[Close]
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_NECH7 (40S ribosomal protein S1 OS=Nectria haematococca (strain 77-13-4 / FGSC 9596 / MPVI) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.350e-61
Identity = 117/180 (65.00%), Postives = 141/180 (78.33%), Query Frame = 2 
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWY IKAP+ F VR+VGKTLV RT G K A++ LK R+ EVSL DL  +E+HA+RK+RLR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V VKTTD++ +RLF I FTKR PNQ+K+T YA +SQIR IRRKM +I+  +A+SC L  L  K I EVIGREIEK T  IYPL
Sbjct:   28 DWYSIKAPNPFNVRDVGKTLVNRTTGLKNANDALKGRIVEVSLADLQKDEDHAFRKVRLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLIRLFAIAFTKRRPNQIKKTTYAASSQIRAIRRKMTDIIQREASSCTLTQLTSKLIPEVIGREIEKSTQGIYPL 207
[Close]
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_MAGGR (40S ribosomal protein S1 OS=Magnaporthe grisea GN=RPS1 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.350e-61
Identity = 116/180 (64.44%), Postives = 143/180 (79.44%), Query Frame = 2 
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWY IKAP+ F +R+VGKTLV R+ G K A++ LK R+FEVSL DL  +E+HA+RKI+LR ++VQGKN LTNF G++FT+DKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA +SQIR IRRKM EI+  +A++C L+ L  K I EVIGREIEK T  IYPL
Sbjct:   28 DWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQKDEDHAFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEKATQGIYPL 207
[Close]
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.303e-61
Identity = 114/180 (63.33%), Postives = 142/180 (78.89%), Query Frame = 2 
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYD+KAP+ F +RN+GKTLV RTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEK   SIYPL
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207
[Close]
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.303e-61
Identity = 114/180 (63.33%), Postives = 142/180 (78.89%), Query Frame = 2 
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYD+KAP+ F +RN+GKTLV RTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEK   SIYPL
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207
[Close]
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PENCW (40S ribosomal protein S1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rps1 PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.303e-61
Identity = 114/180 (63.33%), Postives = 143/180 (79.44%), Query Frame = 2 
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            D Y +KAPS F+ R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA + VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EI+  +A++C L  L  K I EVIGREIEK T  IYPL
Sbjct:   28 DEYSVKAPSTFQTRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREASTCTLSQLTHKLIPEVIGREIEKSTQGIYPL 207
[Close]
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 2.303e-61
Identity = 114/180 (63.33%), Postives = 142/180 (78.89%), Query Frame = 2 
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYD+KAP+ F +RN+GKTLV RTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEK   SIYPL
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207
[Close]
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_HUMAN (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.303e-61
Identity = 114/180 (63.33%), Postives = 142/180 (78.89%), Query Frame = 2 
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYD+KAP+ F +RN+GKTLV RTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEK   SIYPL
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207
The following BLAST results are available for this feature:
BLAST of FC930930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
RS3A_TALSN6.060e-6265.0040S ribosomal protein S1 OS=Talaromyces stipitatus... [more]
RS3A_CRYNE6.060e-6265.0040S ribosomal protein S1 OS=Cryptococcus neoforman... [more]
RS3A_PENMQ1.350e-6165.0040S ribosomal protein S1 OS=Penicillium marneffei ... [more]
RS3A_NECH71.350e-6165.0040S ribosomal protein S1 OS=Nectria haematococca (... [more]
RS3A_MAGGR1.350e-6164.4440S ribosomal protein S1 OS=Magnaporthe grisea GN=... [more]
RS3A_TAEGU2.303e-6163.3340S ribosomal protein S3a OS=Taeniopygia guttata G... [more]
RS3A_RAT2.303e-6163.3340S ribosomal protein S3a OS=Rattus norvegicus GN=... [more]
RS3A_PENCW2.303e-6163.3340S ribosomal protein S1 OS=Penicillium chrysogenu... [more]
RS3A_MOUSE2.303e-6163.3340S ribosomal protein S3a OS=Mus musculus GN=Rps3a... [more]
RS3A_HUMAN2.303e-6163.3340S ribosomal protein S3a OS=Homo sapiens GN=RPS3A... [more]

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Properties
Property NameValue
Genbank descriptionC34110E11EF PostHarvP1 Citrus clementina cDNA clone C34110E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930930 ID=FC930930; Name=FC930930; organism=Citrus clementina; type=EST; length=696bp
GCTCTTCACTCAAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTC
TCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATT
TCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAA
GAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATG
TTGGCAAGACTCTTGTTGCCCGGACTCAGGGTACCAAGATTGCATCAGAA
GGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGA
AGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAG
GGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACAAG
CTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGA
TGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATTCA
CCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGC
CAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAGGC
AGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGTGA
TTGGAAGAGAGATTGAGAAAGGCACGTCAAGCATATACCCCTTACA
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