FC930936

Overview
NameFC930936
Unique NameFC930936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.154e-91
Identity = 169/202 (83.66%), Postives = 179/202 (88.61%), Query Frame = 1
Query:   91 MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            MEGKEEDVR+GANKF ERQPIGT+AQ+   KDY EPPPAP FEPGEL SWSF+RAGIAEFIATFLFLYI+VLTVMGV +S   C++VGIQGIAWAFGGMIF LVYCTAGISGGHINPAVT GLFLARKLSLTRAL+Y+VMQCLGAICGAGVVKGF    QY  L GGAN VAHGYTKG GLGAEIIGTF LVYTVFSATDAK
Sbjct:    1 MEGKEEDVRVGANKFPERQPIGTSAQSD--KDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQ-PKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAK 199          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.154e-91
Identity = 169/202 (83.66%), Postives = 179/202 (88.61%), Query Frame = 1
Query:   91 MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            MEGKEEDVR+GANKF ERQPIGT+AQ+   KDY EPPPAP FEPGEL SWSF+RAGIAEFIATFLFLYI+VLTVMGV +S   C++VGIQGIAWAFGGMIF LVYCTAGISGGHINPAVT GLFLARKLSLTRAL+Y+VMQCLGAICGAGVVKGF    QY  L GGAN VAHGYTKG GLGAEIIGTF LVYTVFSATDAK
Sbjct:    1 MEGKEEDVRVGANKFPERQPIGTSAQSD--KDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQ-PKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAK 199          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 2.813e-91
Identity = 168/202 (83.17%), Postives = 180/202 (89.11%), Query Frame = 1
Query:   91 MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            MEGKEEDVR+GANKF ERQPIGT+AQ+   KDY EPPPAPLFEPGEL SWSF+RAGIAEFIATFLFLYI+VLTVMGV +S   C++VGIQGIAWAFGGMIF LVYCTAGISGGHINPAVT GLFLARKLSLTRA++Y+VMQCLGAICGAGVVKGF    QY  L GGAN +AHGYTKG GLGAEIIGTF LVYTVFSATDAK
Sbjct:    1 MEGKEEDVRVGANKFPERQPIGTSAQSD--KDYKEPPPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQ-PKQYQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVFSATDAK 199          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 328.176 bits (840), Expect = 2.633e-89
Identity = 165/202 (81.68%), Postives = 176/202 (87.13%), Query Frame = 1
Query:   91 MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            MEGKEEDVRLGAN++ ERQPIGTAAQ  + KDY EPP AP+FE  EL SWSFYRAGIAEF+ATFLFLYIS+LTVMGV KS +KC+TVGIQGIAW+FGGMIF LVYCTAGISGGHINPAVT GLFLARKLSLTRA+FYM MQCLGAICGAGVVKGF   G Y    GGAN V  GYTKGDGLGAEI+GTF LVYTVFSATDAK
Sbjct:    1 MEGKEEDVRLGANRYTERQPIGTAAQGAEEKDYREPPAAPVFEVEELTSWSFYRAGIAEFVATFLFLYISILTVMGVNKSASKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQ-RGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAK 201          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 5.865e-89
Identity = 166/202 (82.18%), Postives = 176/202 (87.13%), Query Frame = 1
Query:   91 MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            MEGKEEDVRLGANKF+ER  IGTAAQ  D KDY EPPPAPLFEPGELKSWSFYR GIAEF+ATFLFLYIS+LTVMGV KS +KC+TVGIQGIAW+FGGMI  LVYCTAGIS GHINPAVT GLFLARKLSLTRA+FY++MQCLGAICG GVVKGF   G Y    G  NVVA GYTKGDGLGAEI+GTF LVYTVFSATDAK
Sbjct:    1 MEGKEEDVRLGANKFSERHAIGTAAQGTDDKDYKEPPPAPLFEPGELKSWSFYRPGIAEFVATFLFLYISILTVMGVSKSTSKCATVGIQGIAWSFGGMILALVYCTAGIS-GHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQ-QGLYMGNGGRRNVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAK 200          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.550e-84
Identity = 154/206 (74.76%), Postives = 173/206 (83.98%), Query Frame = 1
Query:   79 GLAEMEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            G  +   +EEDVR+G ++F ERQPIGTAA    G+DY EPP APLFE  EL SWSFYRAGIAEF+ATFLFLY++VLTVMGV KS +KC TVGIQGIAWAFGGMIF LVYCTAG+SGGHINPAVT GL LARKLSLTRA++Y+VMQCLGA+CGAGVVK F G+  Y    GGAN V+ GYTKGDGLGAE++GTF LVYTVFSATDAK
Sbjct:    4 GTLQDRSEEEDVRVGVDRFPERQPIGTAADDL-GRDYSEPPAAPLFEASELSSWSFYRAGIAEFVATFLFLYVTVLTVMGVSKSPSKCGTVGIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAF-GSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVYTVFSATDAK 207          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 8.805e-69
Identity = 131/182 (71.98%), Postives = 142/182 (78.02%), Query Frame = 1
Query:  151 IGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            +    +T  GKDYV+PPPAPL + GELKSWSFYRA IAEFIAT LFLY++V TV+G  K    C  VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YM+ QCLGAICG G VK FM    Y  L GGAN VA GY+KG  LGAEIIGTF LVYTVFSATD K
Sbjct:    5 VSEEGKTHHGKDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKT-PYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYTVFSATDPK 185          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.271e-67
Identity = 126/175 (72.00%), Postives = 140/175 (80.00%), Query Frame = 1
Query:  172 QDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G  K    C++VG+ GIAW+FGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YM+ QC GAICG G+VK FM  G Y +  GGAN VA GY KG   GAE+IGTF LVYTVFSATD K
Sbjct:   14 QHGKDYVDPPPAPFFDMGELKLWSFWRAAIAEFIATLLFLYITVATVIGYKKETDPCASVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVFSATDPK 187          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.112e-66
Identity = 127/173 (73.41%), Postives = 137/173 (79.19%), Query Frame = 1
Query:  178 GKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            GKDYV+PPPAPL +  ELK WSFYRA IAEFIAT LFLY++V TV+G       C  VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RA+ YMV QCLGAICG G+VK FM    Y RL GGAN VA GY+ G  LGAEIIGTF LVYTVFSATD K
Sbjct:   12 GKDYVDPPPAPLLDMAELKLWSFYRAIIAEFIATLLFLYVTVATVIGHKNQTGPCGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFM-MTPYKRLGGGANTVADGYSTGTALGAEIIGTFVLVYTVFSATDPK 183          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.316e-64
Identity = 123/179 (68.72%), Postives = 135/179 (75.42%), Query Frame = 1
Query:  181 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGV-------VKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            KDY +PPPAPL +P EL  WS YRA IAEFIAT LFLYI+VLT++G        +  NT+C  VGI GIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFL RK+SL RAL YM+ QC GAICGAG+ KGF     Y R  GG N V+ GY KG  LGAEIIGTF LVYTVFSATD K
Sbjct:   17 KDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQ-KSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPK 194          
The following BLAST results are available for this feature:
BLAST of FC930936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
PIP11_VICFA2.154e-9183.66Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH2.154e-9183.66Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP12_ARATH2.813e-9183.17Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP13_ORYSJ2.633e-8981.68Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP11_MAIZE5.865e-8982.18Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP16_MAIZE2.550e-8474.76Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP27_ARATH8.805e-6971.98Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP1_ATRCA1.271e-6772.00Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP28_ARATH9.112e-6673.41Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP27_MAIZE1.316e-6468.72Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34110F05EF PostHarvP1 Citrus clementina cDNA clone C34110F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930936 ID=FC930936; Name=FC930936; organism=Citrus clementina; type=EST; length=696bp
GACTCATTCTCATCACAACATCAAACGGCCACAAACAAAAAAGCAAGTGC
TTCTTATTGACTGTTTTGTGTTTTTGAGGGACTAGCAGAAATGGAAGGTA
AAGAAGAGGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCG
ATTGGGACGGCGGCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCC
ACCGGCGCCGCTCTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACA
GGGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCC
GTACTGACAGTGATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGT
CGGCATTCAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCG
TTTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACA
CTCGGCCTGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTA
CATGGTGATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGG
GTTTCATGGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTC
GTAGCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGG
TACTTTTGGTCTTGTCTACACAGTTTTCTCTGCCACTGATGCCAAA
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