FC930936

Overview
NameFC930936
Unique NameFC930936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 54/156 (34.62%), Postives = 81/156 (51.92%), Query Frame = 1
Query:  250 RAGIAEFIATFLFLYISVLTVMGV----VKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIG---TFGLVYTVFSATDAK 696
            RA  AEF +TFLF++I+V + +          +  S++    +A AFG  +F  V+  A +SGGH+NPAVT    +   +++  A+FY   Q LG+   A +V  ++ AGQ    A     +A   T   G GA I+    TF +VYTV  A D +
Sbjct:   18 RAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFG--LFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTF-ACLVLHYISAGQ----AVPTTRIAVEMT---GFGAGILEGVLTFMVVYTVHVAGDPR 163          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: AQPM_METTM (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=aqpM PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 48/153 (31.37%), Postives = 72/153 (47.06%), Query Frame = 1
Query:  259 IAEFIATFLFLY-------ISVLTVMGVVKSNTKCSTVGIQG-------IAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTV 675
            IAEFI TF+ ++       ++++   G    N     +G+ G       I  AFG  I   +Y    ISG HINPAVT+GL+  +K      + Y++ Q LGA  G+ +     G G       GA     G +    + AE++GTF L+ T+
Sbjct:    9 IAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITI 161          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 51/152 (33.55%), Postives = 78/152 (51.32%), Query Frame = 1
Query:  250 RAGIAEFIATFLFLYISVLTVM--GVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGA------EIIGTFGLVYTVFS 681
            RA +AE I TFLF++  V + M  G +      + VG+  +A A   ++ V+V     +SGGHINPAVTLGL    +++L R+  Y+  Q LG+   A ++  F+     G       V  H    G G+GA      E + TF L++ V++
Sbjct:   19 RAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTL-ACLLLAFLAVADSG-------VPVHAL--GAGVGALRGVLMEAVLTFSLLFAVYA 160          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: AQP2_HORSE (Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  235 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVV 546
            S +F RA +AEF+AT LF++  + + +     N   +   +  IA AFG  I  LV     +SG HINPAVT+   +   +S  RA FY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVLAEFLATLLFVFFGLGSAL-----NWPQAMPSVLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: AQP2_DUGDU (Aquaporin-2 (Fragment) OS=Dugong dugon GN=AQP2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 40/104 (38.46%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  235 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVV 546
            S +F RA  +EF+AT LF++  + + +     N   +   +  IA AFG  I  LV     ISG HINPAVT+   +   +S  RA FY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVFSEFLATLLFVFFGLGSAL-----NWPQALPSVLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRATFYLAAQLLGAVAGAAIL 99          
The following BLAST results are available for this feature:
BLAST of FC930936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
TIP51_ORYSJ4.910e-1134.62Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
AQPM_METTM4.910e-1131.37Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
TIP44_MAIZE6.413e-1133.55Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
AQP2_HORSE6.413e-1138.46Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 P... [more]
AQP2_DUGDU8.376e-1138.46Aquaporin-2 (Fragment) OS=Dugong dugon GN=AQP2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34110F05EF PostHarvP1 Citrus clementina cDNA clone C34110F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930936 ID=FC930936; Name=FC930936; organism=Citrus clementina; type=EST; length=696bp
GACTCATTCTCATCACAACATCAAACGGCCACAAACAAAAAAGCAAGTGC
TTCTTATTGACTGTTTTGTGTTTTTGAGGGACTAGCAGAAATGGAAGGTA
AAGAAGAGGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCG
ATTGGGACGGCGGCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCC
ACCGGCGCCGCTCTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACA
GGGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCC
GTACTGACAGTGATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGT
CGGCATTCAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCG
TTTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACA
CTCGGCCTGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTA
CATGGTGATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGG
GTTTCATGGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTC
GTAGCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGG
TACTTTTGGTCTTGTCTACACAGTTTTCTCTGCCACTGATGCCAAA
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