FC930936

Overview
NameFC930936
Unique NameFC930936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 60/152 (39.47%), Postives = 88/152 (57.89%), Query Frame = 1
Query:  241 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            +F++A  AEF+A  +F+ +SV + +    S      V +  I+  FG  I  +V C   ISGGHINPAVT+ +   RK+S+ +++FY+  QCLGAI GAG++         G L  G   V    T G GL  E+I TF LV+T+F++ D+K
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGL--GVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSK 181          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 60/152 (39.47%), Postives = 88/152 (57.89%), Query Frame = 1
Query:  241 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            +F++A  AEF+A  +F+ +SV + +    S      V +  I+  FG  I  +V C   ISGGHINPAVT+ +   RK+S+ +++FY+  QCLGAI GAG++         G L  G   V    T G GL  E+I TF LV+T+F++ D+K
Sbjct:   36 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPNVVGGL--GVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSK 184          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 59/152 (38.82%), Postives = 89/152 (58.55%), Query Frame = 1
Query:  241 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            +F++A  AEF+A  +F+ +S+ + +       K   V +  I+  FG  I  +V C   ISGGHINPAVT+ +   RK+S+ +++FY+  QCLGAI GAG++         G L  G  +V    T G GL  E+I TF LV+T+F++ D+K
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINW-GGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGL--GVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSK 181          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 59/157 (37.58%), Postives = 88/157 (56.05%), Query Frame = 1
Query:  226 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            E+ S +F +A  AEF+AT +F++  + + +         +   I  IA AFG  I  L      +SGGHINPA+TL L +  ++SL RA+FY+V Q +GAI GAG++ G       G LA   N + +  T G  +  E+I TF L   +FS+TD++
Sbjct:    4 EVCSLAFLKAVFAEFLATLIFVFFGLASAL-----KWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPGNARGNLA--VNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSR 153          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 61/153 (39.87%), Postives = 89/153 (58.17%), Query Frame = 1
Query:  241 SFYRAGIAEFIATFLFLYISV-LTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            +F++A  AEF+A  +F+ +S+  T+    K N     V +  I+  FG  I  +V C   ISGGHINPAVT+ +   RK+S+ +++FY+  QCLGAI GAG++         G L  G   V    T G GL  E+I TF LV+T+F++ D+K
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPL--PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGL--GVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSK 181          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 57/152 (37.50%), Postives = 89/152 (58.55%), Query Frame = 1
Query:  241 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            +F++A  AEF+A  +F+ +S+ + +    +  K   V +  I+  FG  I  +V C   ISGGHINPAVT+ +   R++S+ +++FY+  QCLGAI GAG++         G L  G   V    + G GL  E+I TF LV+T+F++ D+K
Sbjct:   33 TFWKAVTAEFLAMLIFVLLSLGSTINWGGAE-KPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGL--GVTTVHGNLSAGHGLLVELIITFQLVFTIFASCDSK 181          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 57/157 (36.31%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  226 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            E+ S +F +A  AEF+AT +F++  + + +         +   I  IA AFG  I  L      +SGGHINPA+TL L +  ++SL RA FY+  Q +GAI GAG++ G       G LA   N + +  T+G  +  E+I TF L   +F++TD++
Sbjct:    4 EVCSVAFLKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLA--VNALNNNTTQGQAMVVELILTFQLALCIFASTDSR 153          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 56/157 (35.67%), Postives = 88/157 (56.05%), Query Frame = 1
Query:  226 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            E+ S +F++A  AEF+AT +F++  + + +         +   I  I+ AFG  I  L      +SGGHINPA+TL L +  ++SL RA+FY+  Q +GAI GAG++         G LA   N +++  T G  +  E+I TF L   +FS+TD++
Sbjct:    4 EVCSVAFFKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPGNARGNLA--VNALSNNTTPGKAVVVELILTFQLALCIFSSTDSR 153          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 56/157 (35.67%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  226 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            E+ S +F++A  AEF+AT +F++  + + +         +   I  I+ AFG  I  L      +SGGHINPA+TL L +  ++SL RA+FY+  Q +GAI GAG++         G LA   N + +  T G  +  E+I TF L   +FS+TD++
Sbjct:    4 EVCSLAFFKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGILYWLAPLNARGNLA--VNALNNNTTPGKAMVVELILTFQLALCIFSSTDSR 153          
BLAST of FC930936 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 55/157 (35.03%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  226 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFGLVYTVFSATDAK 696
            E+ S +F +A  AEF+AT +F++  + + +         +   +  I+ AFG  I  +      +SGGH+NPA+TL L +  ++SL RA+FY+V Q +GAI GA ++ G         LA   N + +  T G  + AE+I TF L   VFS+TD++
Sbjct:    4 EVCSAAFLKAVFAEFLATLIFVFFGLGSAL-----KWPSAMPSVLQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYGLAPYNARSNLA--VNALNNNTTAGQAVVAEMILTFQLALCVFSSTDSR 153          
The following BLAST results are available for this feature:
BLAST of FC930936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
AQP4_RAT1.166e-2039.47Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL1.166e-2039.47Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_HUMAN1.989e-2038.82Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP5_PIG3.393e-2037.58Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
AQP4_DIPME3.393e-2039.87Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_BOVIN2.199e-1937.50Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP5_HUMAN2.872e-1936.31Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
AQP5_MOUSE3.751e-1935.67Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
AQP5_RAT8.357e-1935.67Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
AQP5_SHEEP3.176e-1835.03Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110F05EF PostHarvP1 Citrus clementina cDNA clone C34110F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930936 ID=FC930936; Name=FC930936; organism=Citrus clementina; type=EST; length=696bp
GACTCATTCTCATCACAACATCAAACGGCCACAAACAAAAAAGCAAGTGC
TTCTTATTGACTGTTTTGTGTTTTTGAGGGACTAGCAGAAATGGAAGGTA
AAGAAGAGGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCG
ATTGGGACGGCGGCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCC
ACCGGCGCCGCTCTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACA
GGGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCC
GTACTGACAGTGATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGT
CGGCATTCAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCG
TTTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACA
CTCGGCCTGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTA
CATGGTGATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGG
GTTTCATGGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTC
GTAGCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGG
TACTTTTGGTCTTGTCTACACAGTTTTCTCTGCCACTGATGCCAAA
back to top