FC930940

Overview
NameFC930940
Unique NameFC930940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 2.963e-58
Identity = 90/101 (89.11%), Postives = 96/101 (95.05%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            ++T KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSSTGQA GEDSEVILYPQAIFKDPFR+GNNILVMCDAYTPAG+PIPTNKRH  AK F
Sbjct:   14 DATGKIIAEYIWIGGSGMDIRSKARTLPGPVTDPSKLPKWNYDGSSTGQAAGEDSEVILYPQAIFKDPFRKGNNILVMCDAYTPAGDPIPTNKRHNAAKIF 114

HSP 2 Score: 53.5286 bits (127), Expect = 2.963e-58
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFSH  V  EEPWYGIEQEYTL+  DV W
Sbjct:  112 KIFSHPDVAKEEPWYGIEQEYTLMQKDVNW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.863e-58
Identity = 90/101 (89.11%), Postives = 96/101 (95.05%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            ++T+KIIAEYIWIGGSGMD+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GNNILVMCD YTPAGEPIPTNKRH  AK F
Sbjct:   14 DTTEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIF 114

HSP 2 Score: 51.9878 bits (123), Expect = 3.863e-58
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFS  +V +EEPWYGIEQEYTLL  D+ W
Sbjct:  112 KIFSSPEVASEEPWYGIEQEYTLLQKDINW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 3.863e-58
Identity = 88/100 (88.00%), Postives = 97/100 (97.00%), Query Frame = 2 
Query:  137 STDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            +T+KIIAEYIWIGGSG+D+R KARTLPGPV+DPS+LPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRGN+ILVMCDAY+PAGEPIPTNKRHA AK F
Sbjct:   14 TTEKIIAEYIWIGGSGLDLRCKARTLPGPVTDPSELPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNHILVMCDAYSPAGEPIPTNKRHAAAKVF 113

HSP 2 Score: 53.9138 bits (128), Expect = 3.863e-58
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            K+FSH  VVAEE WYGIEQEYTLL  D+ W
Sbjct:  111 KVFSHPDVVAEETWYGIEQEYTLLQKDINW 140
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 5.037e-58
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = 2 
Query:  140 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            TDK+IAEYIW+GGSGMDMRSKARTL GPV DPSKLPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRG+NILVMCDAYTPAGEPIPTNKR+  AK F
Sbjct:   16 TDKVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGSNILVMCDAYTPAGEPIPTNKRNNAAKIF 114

HSP 2 Score: 54.299 bits (129), Expect = 5.037e-58
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIF H  V AEEPWYG+EQEYTLL  DV+W
Sbjct:  112 KIFGHPDVAAEEPWYGLEQEYTLLQKDVQW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.567e-58
Identity = 87/101 (86.14%), Postives = 95/101 (94.06%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            EST+KIIAEYIW+GGSGMD+RSKARTLPGPV DP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+  AK F
Sbjct:   14 ESTEKIIAEYIWVGGSGMDLRSKARTLPGPVDDPAKLPKWNYDGSSTDQAPGDDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYDAAKIF 114

HSP 2 Score: 55.0694 bits (131), Expect = 6.567e-58
Identity = 24/30 (80.00%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFSH  VVAE PWYGIEQEYTLL  DV W
Sbjct:  112 KIFSHPDVVAEVPWYGIEQEYTLLQKDVNW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.561e-58
Identity = 90/101 (89.11%), Postives = 96/101 (95.05%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            ++T+KIIAEYIWIGGSGMD+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR+  AK F
Sbjct:   14 DTTEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYNAAKIF 114

HSP 2 Score: 51.9878 bits (123), Expect = 8.561e-58
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFS  +V AEEPWYGIEQEYTLL  D  W
Sbjct:  112 KIFSSPEVAAEEPWYGIEQEYTLLQKDTNW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.116e-57
Identity = 86/101 (85.15%), Postives = 97/101 (96.04%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            ++T+K+IAEYIWIGGSG+D+RSKARTLPGPV +PS+LPKWNYDGSSTGQAPG+DSEVI+YPQAIFKDPFRRGNNILV+CDAYTPAGEPIPTNKRH  AK F
Sbjct:   14 DTTEKVIAEYIWIGGSGLDLRSKARTLPGPVKNPSELPKWNYDGSSTGQAPGQDSEVIIYPQAIFKDPFRRGNNILVICDAYTPAGEPIPTNKRHNAAKIF 114

HSP 2 Score: 53.5286 bits (127), Expect = 1.116e-57
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFS+  VVAEEPWYGIEQEYTLL  +V W
Sbjct:  112 KIFSNPDVVAEEPWYGIEQEYTLLQKEVNW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.897e-57
Identity = 88/101 (87.13%), Postives = 94/101 (93.07%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            E+T+K+I EYIW+GGSGMD+RSKARTL GPVSDP+KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR   AK F
Sbjct:   14 ETTEKVIVEYIWVGGSGMDLRSKARTLSGPVSDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRCNAAKIF 114

HSP 2 Score: 53.9138 bits (128), Expect = 1.897e-57
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFSH  V AE PWYGIEQEYTLL  +VKW
Sbjct:  112 KIFSHPDVAAEVPWYGIEQEYTLLQKEVKW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 7.155e-57
Identity = 85/101 (84.16%), Postives = 97/101 (96.04%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            ++T+KIIAEYIW+GGSG+D+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPG+DSEVIL+PQAIFKDPFRRGNNILV+CD YTP+G+PIPTNKRHA AK F
Sbjct:   14 DTTEKIIAEYIWVGGSGVDLRSKARTLSGPVNDPSKLPKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFRRGNNILVICDTYTPSGKPIPTNKRHAAAKIF 114

HSP 2 Score: 53.9138 bits (128), Expect = 7.155e-57
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFSH  V AEEPW+GIEQEYTLL  D+ W
Sbjct:  112 KIFSHPDVAAEEPWFGIEQEYTLLQKDIHW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.774e-56
Identity = 83/101 (82.18%), Postives = 94/101 (93.07%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            + +DKIIAEYIW+GGSG+D+RSKART+ GP++D S+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG+NILVMCD YTP GEPIPTNKRH+ AK F
Sbjct:   14 DCSDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIF 114

HSP 2 Score: 55.0694 bits (131), Expect = 7.774e-56
Identity = 24/30 (80.00%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFSH  VVAE PWYGIEQEYTLL  DV W
Sbjct:  112 KIFSHPDVVAEVPWYGIEQEYTLLQKDVNW 141
The following BLAST results are available for this feature:
BLAST of FC930940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLN13_ARATH2.963e-5889.11Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLN11_ORYSJ3.863e-5889.11Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA1_PEA3.863e-5888.00Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]
GLNA2_SOYBN5.037e-5889.90Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA2_PHAVU6.567e-5886.14Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA3_MAIZE8.561e-5889.11Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLNA1_PHAVU1.116e-5785.15Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLNA1_VITVI1.897e-5787.13Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA3_LUPAN7.155e-5784.16Glutamine synthetase nodule isozyme (Fragment) OS=... [more]
GLN12_ORYSJ7.774e-5682.18Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110F09EF PostHarvP1 Citrus clementina cDNA clone C34110F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930940 ID=FC930940; Name=FC930940; organism=Citrus clementina; type=EST; length=518bp
GAAGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCTCATT
ACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCT
CTGCTCTCAGATCTCCTTAACTTTAACCTCTCAGAATCCACTGACAAGAT
CATCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGGAGCA
AAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAG
TGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGA
AGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCA
ACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACCAATT
CCAACAAACAAAAGACATGCGCCTGCCAAAAATTTTCAGCCATTCTCAAG
TTGTGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACACCTTACTG
CACAANGATGTTAAATGG
back to top