FC930940

Overview
NameFC930940
Unique NameFC930940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.658e-22
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKL---PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG-NNILVMCDAYTPAGEPIPTNKRH 418
            E +   I EY+WIGG+G ++RSK R L   +    KL   P WNYDGSST QA G  SEV LYP+ I++ PFRR  N ++V+CD Y   G P+ TN RH
Sbjct:   14 EQSSISIIEYVWIGGNG-ELRSKTRVLYSSIMTGYKLSDIPVWNYDGSSTNQANGSSSEVFLYPRNIYRCPFRRNVNGVIVICDTYDVNGVPLETNHRH 111          

HSP 2 Score: 30.0314 bits (66), Expect = 2.658e-22
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 3
Query:  459 EEPWYGIEQEYTLLHXD 509
            E+PWYG+EQEY +   D
Sbjct:  123 EKPWYGLEQEYFIFRKD 139          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.907e-22
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  146 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRH 418
            +I+AEY+W+  +G + RSK+RTLP        LP WN+DGSST QAPG++S+V L P A++ DPFR   NI+V+ + +   G P   N RH
Sbjct:   25 QIMAEYVWVDAAG-ETRSKSRTLPEKDYKAEDLPVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNAGGTPNKFNFRH 114          

HSP 2 Score: 33.113 bits (74), Expect = 9.907e-22
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  459 EEPWYGIEQEYTLLHXD 509
            +EPW+G+EQEYTLL  D
Sbjct:  126 DEPWFGLEQEYTLLGPD 142          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.289e-21
Identity = 47/90 (52.22%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  146 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKR 415
            ++ AEYIWI   G  +RSK  TL    S  + L +WN+DGSST QAP ++S+V L P AIFKDPFR G NILV+C+ Y   G P  +N R
Sbjct:   24 RVQAEYIWIDAEG-GIRSKTMTLDKAPSSVADLKEWNFDGSSTNQAPADNSDVFLRPVAIFKDPFRGGANILVLCECYDNDGTPNKSNYR 112          

HSP 2 Score: 31.187 bits (69), Expect = 1.289e-21
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  462 EPWYGIEQEYTLLHXD 509
            EPW+G+EQEYTL   D
Sbjct:  126 EPWFGLEQEYTLFDAD 141          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.806e-21
Identity = 53/97 (54.64%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  146 KIIAEYIWIGGSGMDMRSKARTLPGPVSD--PSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAK 430
            ++IAEYIWI   G   RSK+RTLP   S   P +LP WN+DGSSTGQAPGE+S+V L P A+F DPFR   NILV+ + +   G P   N RH  AK
Sbjct:   25 QLIAEYIWIDSEG-GTRSKSRTLPEKESQYLPEELPIWNFDGSSTGQAPGENSDVYLKPVAVFPDPFRGSPNILVLSECWNADGTPNKFNHRHEAAK 120          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 6.241e-21
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  143 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRH 418
            DK+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH
Sbjct:   24 DKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRH 115          

HSP 2 Score: 30.0314 bits (66), Expect = 6.241e-21
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  459 EEPWYGIEQEYTLLHXD 509
            + PW+G+EQEYTL+  D
Sbjct:  127 QRPWFGMEQEYTLMGTD 143          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_CANFA (Glutamine synthetase OS=Canis familiaris GN=GLUL PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 8.118e-21
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  143 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRH 418
            +K+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKGVEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRH 115          

HSP 2 Score: 30.0314 bits (66), Expect = 8.118e-21
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  459 EEPWYGIEQEYTLLHXD 509
            + PW+G+EQEYTL+  D
Sbjct:  127 QHPWFGMEQEYTLMGTD 143          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.122e-21
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  149 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNFQPFSSCG*RTMVWY 478
            ++AEYIWI     ++RSK +TL    +    LP+WN+DGSST QAPG DS++ L P AI+ DPFRRG+NI+V+ + +   G P   N RH  AK      S   + ++W+
Sbjct:   15 VLAEYIWIDAH-FNIRSKCKTLDKKPTSIEDLPEWNFDGSSTDQAPGHDSDIYLRPAAIYPDPFRRGDNIIVLAECWNNDGTPNKFNHRHECAK----LMSAHEKEVIWF 119          

HSP 2 Score: 25.0238 bits (53), Expect = 8.122e-21
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  468 WYGIEQEYTL 497
            W+GIEQEYT+
Sbjct:  118 WFGIEQEYTM 127          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.056e-20
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  143 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHA 421
            +KI   YIW+ G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L+P A+F+DPFRR  N LV C+ +    +P  TN RH+
Sbjct:   24 EKIQLMYIWVDGTGEGLRCKTRTLDCDPKCVEELPEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRRDPNKLVFCEVFKYNRKPAETNLRHS 116          

HSP 2 Score: 31.187 bits (69), Expect = 1.056e-20
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:  450 VVAEEPWYGIEQEYTLLHXD 509
            V ++ PW+G+EQEYTL+  D
Sbjct:  124 VSSQHPWFGMEQEYTLMGTD 143          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 90.5077 bits (223), Expect = 1.374e-20
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  143 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRH 418
            +K+ A YIW+ G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L+P A+F+DPFR+  N LV+C+ +    +P  TN RH
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRKDPNKLVLCEVFKYNRKPAETNLRH 115          

HSP 2 Score: 30.0314 bits (66), Expect = 1.374e-20
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  459 EEPWYGIEQEYTLLHXD 509
            + PW+G+EQEYTL+  D
Sbjct:  127 QHPWFGMEQEYTLMGTD 143          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_HUMAN (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4)

HSP 1 Score: 90.5077 bits (223), Expect = 1.374e-20
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  143 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRH 418
            +K+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV+C+ +     P  TN RH
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRH 115          

HSP 2 Score: 30.0314 bits (66), Expect = 1.374e-20
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  459 EEPWYGIEQEYTLLHXD 509
            + PW+G+EQEYTL+  D
Sbjct:  127 QHPWFGMEQEYTLMGTD 143          
The following BLAST results are available for this feature:
BLAST of FC930940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLNA_MIMIV2.658e-2250.51Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA_FUSSH9.907e-2247.25Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_CRYNE1.289e-2152.22Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_NEUCR4.806e-2154.64Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA_BOVIN6.241e-2146.74Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]
GLNA_CANFA8.118e-2145.65Glutamine synthetase OS=Canis familiaris GN=GLUL P... [more]
GLNA_YARLI8.122e-2143.64Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_RAT1.056e-2045.16Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]
GLNA_MOUSE1.374e-2044.57Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA_HUMAN1.374e-2045.65Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34110F09EF PostHarvP1 Citrus clementina cDNA clone C34110F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930940 ID=FC930940; Name=FC930940; organism=Citrus clementina; type=EST; length=518bp
GAAGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCTCATT
ACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCT
CTGCTCTCAGATCTCCTTAACTTTAACCTCTCAGAATCCACTGACAAGAT
CATCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGGAGCA
AAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAG
TGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGA
AGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCA
ACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACCAATT
CCAACAAACAAAAGACATGCGCCTGCCAAAAATTTTCAGCCATTCTCAAG
TTGTGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACACCTTACTG
CACAANGATGTTAAATGG
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