FC930940

Overview
NameFC930940
Unique NameFC930940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.779e-15
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 2
Query:  143 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAK 430
            +K+   Y+WI G+G  +R K RTL        ++P+WN+DGSST QA G +S++ L P  +F+DPF    N LVMC+      +   TN RH   K
Sbjct:   24 EKVQVTYVWIDGTGEGVRCKTRTLDQEPKTIDEIPEWNFDGSSTHQAEGSNSDMYLIPVQMFRDPFCLDPNKLVMCEVLKYNRKSAETNLRHTCKK 119          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.512e-14
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  149 IIAEYIWIGGSG--MDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKR 415
            I AEYIWI G+     +RSK + L    SD S+LP+W +DGSST QA G  S+++L P     DP R G+++LV+C+       P P+N R
Sbjct:    3 IKAEYIWIDGTQPTAKLRSKTKIL----SDGSRLPRWGFDGSSTNQAEGHASDLVLEPVFSCPDPIRGGDHLLVLCEVLHTDLTPHPSNTR 89          

HSP 2 Score: 27.335 bits (59), Expect = 1.512e-14
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3
Query:  459 EEPWYGIEQEYTLLHXD 509
            +EP +GIEQEYT L  D
Sbjct:  102 QEPIFGIEQEYTFLKGD 118          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.689e-13
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  155 AEYIWIGGSG--MDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNFQPFSS 451
            AEYIWI G+     +RSK + + G  +    LP W +DGSST QA G  S+ +L P     DP R G++ILV+C+       P  +N R A A+  + F++
Sbjct:    5 AEYIWIDGTEPTAKLRSKTKIITGQPAGLDALPIWGFDGSSTNQAEGHSSDCVLKPVFTCPDPIRGGDDILVLCEVLNIDLTPHASNTRAALAEVAERFAA 105          

HSP 2 Score: 25.7942 bits (55), Expect = 2.689e-13
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  456 AEEPWYGIEQEYT 494
            A+EP +GIEQEYT
Sbjct:  105 AQEPIFGIEQEYT 117          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 40/91 (43.96%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  155 AEYIWIGGSGMD--MRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHA 421
            AEYIWI G+  +  MRSK R     + D  +   W +DGSST QAPG +S+ +L P     DP R G+N LV+C+       P PTN R A
Sbjct:    5 AEYIWIDGTEPEPLMRSKTRI----IKDGKEPEIWGFDGSSTNQAPGSNSDCVLRPVFETPDPIRGGDNRLVLCEVQLTDFTP-PTNTRAA 90          
The following BLAST results are available for this feature:
BLAST of FC930940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLNA_XENLA8.779e-1540.63Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA2_STRHY1.512e-1443.96Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_STRVR2.689e-1338.61Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_FRAAL7.691e-1143.96Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]

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Properties
Property NameValue
Genbank descriptionC34110F09EF PostHarvP1 Citrus clementina cDNA clone C34110F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930940 ID=FC930940; Name=FC930940; organism=Citrus clementina; type=EST; length=518bp
GAAGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCTCATT
ACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCT
CTGCTCTCAGATCTCCTTAACTTTAACCTCTCAGAATCCACTGACAAGAT
CATCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGGAGCA
AAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAG
TGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGA
AGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCA
ACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACCAATT
CCAACAAACAAAAGACATGCGCCTGCCAAAAATTTTCAGCCATTCTCAAG
TTGTGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACACCTTACTG
CACAANGATGTTAAATGG
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