FC930941

Overview
NameFC930941
Unique NameFC930941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC1_THACU (Laccase-1 OS=Thanatephorus cucumeris GN=LCC1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.202e-14
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  263 FNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFL-----ISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLA 568
            +   ++ G+I P GVK+   L+NG +PGP I A   D L + V N L  P +     I W+G+ Q RN+  DG  + T CPI P +++TY + + DQ G+Y+Y   L+
Sbjct:   24 YGLKISDGEIAPDGVKRNATLVNGGYPGPLIFANKGDTLKVKVQNKLTNPEMYRTTSIHWHGLLQHRNADDDGPSFVTQCPIVPRESYTYTIPLDDQTGTYWYHSHLS 131          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC13_ARATH (Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.202e-14
Identity = 49/166 (29.52%), Postives = 76/166 (45.78%), Query Frame = 2
Query:  206 LLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDP----PAGDFTILAGDWYKK 688
            LLL   + S    E    F  + +    +  L      I +NGQFPGP++E    D+L+I+  N       + W+G++Q RN W DG  Y T CPI P  ++TY   ++DQ G+ ++    A               RP +  P  P    P  + T+L G+W+ +
Sbjct:    9 LLLAIFVASLVNAE--VHFHEFVIQETPVKRLCRVHNSITVNGQFPGPTLEVRNGDSLVITAINKARYNISLHWHGIRQMRNPWADGPEYITQCPIQPGGSYTYRFTMEDQEGTLWWH---AHSRWLRATVYGALIIRPPLSSPHYPFPVIPKREITLLLGEWWDR 169          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC2_ORYSJ (Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 46/171 (26.90%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  179 MASYSSICCLLLVFMLVS--CTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWY 682
            MAS +S   LL+  +L++       +  + + +++   ++  L  ++  + +NG +PGP+I A   D +I++V N +     I W+G++QRRN W DG  Y T CPI    ++ Y   V  Q G+ ++   +A+             +   +P PF  P  +  I+ G+W+
Sbjct:    1 MASAASSLPLLVSSLLLALFALGAHADVKRYQFDIVMSNVSRLCHEKAMVTVNGSYPGPTIYAREGDRVIVNVTNHVKHNMTIHWHGLKQRRNGWADGPAYVTQCPIGSGGSYVYDFNVTRQRGTLWWHAHIAWMRATVHGAIVILPAAG-VPYPFPKPDDEAEIVLGEWW 170          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC1_ARATH (Laccase-1 OS=Arabidopsis thaliana GN=LAC1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 50/172 (29.07%), Postives = 80/172 (46.51%), Query Frame = 2
Query:  176 EMASYSSICCLLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPP--AGDFTILAGDWY 682
            E   +  I   LL+F  +      S  R F++NV +  +  L   +Q + +NGQ+PGP++     D + I V N +     I W+G++Q R  W DG  Y T CPI  ++++TY  +V+DQ G+  +    A H              P  P PF       +  I+ G+W+
Sbjct:    2 ENLGFLIISTFLLLFTTLLPYSSASTTRRFHFNVEWKKVTRLCHTKQLLTVNGQYPGPTVAVHEGDIVEIKVTNRIAHNTTIHWHGLRQYRTGWADGPAYITQCPIRSKQSYTYRFKVEDQRGTLLWH---AHHSWQRASVYGAFIIYPRQPYPFSGSHIQSEIPIILGEWW 170          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSI (Putative laccase-18 OS=Oryza sativa subsp. indica GN=LAC18 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.372e-13
Identity = 41/123 (33.33%), Postives = 61/123 (49.59%), Query Frame = 2
Query:  323 LINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGV-YGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLI-PVPFDPPAGDFTILAGDWYK 685
            ++NG+FPGP+++    D +++ V N L     I W+GV+Q R+ W DG  Y T CPI P    TY   V  Q+G+ ++    A               RP     PF  PA D  I+ G+W++
Sbjct:   54 VVNGRFPGPTVDVTEGDTVVVHVINRLPHGLTIHWHGVRQMRSCWADGAGYVTECPIHPGGEKTYRFNVTGQVGTLWWH---AHVTCLRATINGAFIIRPRDGKYPFPTPAKDVPIIIGEWWE 173          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC9_ORYSJ (Putative laccase-9 OS=Oryza sativa subsp. japonica GN=LAC9 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 43/143 (30.07%), Postives = 72/143 (50.35%), Query Frame = 2
Query:  257 RFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWY 682
            R +++ +T  +   L  ++  + +NGQFPGP+I A   D +I++V N  ++   I W+GV Q RN W DG  + T CPI P  NFTY + + ++ G+ ++     F              R     PF  P  +  ++ G+W+
Sbjct:   31 RHYDFFITETNYTRLCHEKSILTVNGQFPGPTIYARKGDLVIVNVHNNGNKNITIHWHGVDQPRNPWSDGPEFITQCPIRPGGNFTYQVILSEEEGTLWWHAHSDFDRATVHGAIVIHPKRG-TTFPFKKPDKEIPVILGEWW 172          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC14_ARATH (Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 37/124 (29.84%), Postives = 64/124 (51.61%), Query Frame = 2
Query:  320 ILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWYKK 688
            + +NG+FPGP+++A   D LI++V N  +    + W+G +Q RN W DG  Y T CPI P +++ Y + +K + G+ ++     +              R     PF  P  +  ++ G+W+KK
Sbjct:   57 LTVNGEFPGPTLKAYRGDKLIVNVINNANYNITLHWHGARQIRNPWSDGPEYVTQCPIRPGESYVYRIDLKVEEGTIWWHAHSQWARATVHGAFIVYPKRG-SSYPFPKPHREIPLILGEWWKK 179          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC11_ARATH (Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 46/163 (28.22%), Postives = 78/163 (47.85%), Query Frame = 2
Query:  203 CLLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWYKK 688
            C LL F+  S    ++  + + ++V   +I  +   +  + +NG FPGP++ A   D +II+V N +     I W+G++Q RN W DG  Y T CPI   +++ Y   V  Q G+ ++   + +               P  P PF  P  +  I+ G+W+ K
Sbjct:   10 CYLLAFLGYSPV--DAAVKKYQFDVQVKNISRICNAKPIVTVNGMFPGPTVYAREGDRVIINVTNHVQYNMSIHWHGLKQYRNGWADGPAYITQCPIQTGQSYLYDFNVTGQRGTLWWHAHILW-LRATVYGAIVILPAPGKPYPFPQPYQESNIILGEWWNK 169          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSJ (Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC18 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 41/123 (33.33%), Postives = 61/123 (49.59%), Query Frame = 2
Query:  323 LINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGV-YGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLI-PVPFDPPAGDFTILAGDWYK 685
            ++NG+FPGP+++    D +++ V N L     I W+GV+Q R+ W DG  Y T CPI P    TY   V  Q+G+ ++    A               RP     PF  PA D  I+ G+W++
Sbjct:   54 VVNGRFPGPTVDVTEGDTVVVHVINRLPHGLTIHWHGVRQMRSCWADGAGYVTECPIHPGGEKTYRFNVTGQVGTLWWH---AHVTCLRATINGAFIIRPRNGKYPFLTPAKDVPIIIGEWWE 173          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC15_ORYSJ (Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC15 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 41/123 (33.33%), Postives = 56/123 (45.53%), Query Frame = 2
Query:  323 LINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGV-YGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWYKK 688
            ++NGQ PGP+IE    D++ + V N       I W+GV Q  N W DGV   T  PI P  NFTY   V  Q G+ ++    AF                    PF  P  +  I+ G+W++K
Sbjct:   63 VVNGQLPGPTIEVTEGDSVTVHVVNKSPYNLTIHWHGVYQLLNCWNDGVPMITQRPIQPNHNFTYRFNVAGQEGTLWWHAHDAFLRGTVHGALIIRPRHGAASYPFPRPHREVPIIIGEWWEK 185          
The following BLAST results are available for this feature:
BLAST of FC930941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
LAC1_THACU5.202e-1437.96Laccase-1 OS=Thanatephorus cucumeris GN=LCC1 PE=1 ... [more]
LAC13_ARATH5.202e-1429.52Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 S... [more]
LAC2_ORYSJ8.873e-1426.90Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 ... [more]
LAC1_ARATH8.873e-1429.07Laccase-1 OS=Arabidopsis thaliana GN=LAC1 PE=2 SV=... [more]
LAC18_ORYSI3.372e-1333.33Putative laccase-18 OS=Oryza sativa subsp. indica ... [more]
LAC9_ORYSJ4.404e-1330.07Putative laccase-9 OS=Oryza sativa subsp. japonica... [more]
LAC14_ARATH4.404e-1329.84Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 S... [more]
LAC11_ARATH5.751e-1328.22Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 S... [more]
LAC18_ORYSJ7.511e-1333.33Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC15_ORYSJ2.185e-1233.33Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC1... [more]

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Properties
Property NameValue
Genbank descriptionC34110F10EF PostHarvP1 Citrus clementina cDNA clone C34110F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930941 ID=FC930941; Name=FC930941; organism=Citrus clementina; type=EST; length=738bp
GACCAAGCAAAAAAGAAAAAGAGAGAGAAAAAGAAAAAAAAAACTAAAGT
TGAGATAGTGAGGTAGTGATTGATATGGCTTTACAGGGATAAAGAAGTTG
GAAACTCTCTTTCTTTTAGTTATTTTTGTTACCATCTATTCTTGTTTAAG
TTTTTGCTCAAGGTTGAGTGTGAGGGAGATGGCTAGTTATAGCAGTATAT
GTTGTTTGCTTTTAGTGTTTATGCTTGTGAGTTGCACTAGAGGTGAAAGT
CCTTACAGATTTTTTAACTGGAATGTTACATACGGTGATATTTATCCTCT
TGGTGTTAAACAACAGGGGATATTGATTAATGGGCAATTTCCAGGGCCTT
CCATTGAGGCTGTGACCAATGATAACTTGATTATCAGTGTTTTCAATGCC
TTGGATGAACCATTTCTCATCTCTTGGAATGGTGTCCAGCAGAGAAGGAA
CTCTTGGCAAGATGGAGTTTATGGCACAAACTGCCCAATCCCTCCAGAAA
AAAACTTCACATATGTTCTACAAGTCAAGGATCAAATTGGTAGCTACTTC
TATTTCCCCTCTCTTGCTTTTCACAAAGCTGCAGGTGGCTATGGTGGCAT
AAAAATTGCAAGCCGACCACTTATTCCTGTGCCCTTTGATCCTCCTGCTG
GAGATTTCACCATTCTTGCTGGAGACTGGTACAAGAAAATCACACTGATT
TGAAAGCATTTTGACAGTGGGAGTGATCTTCCTTTCCT
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