FC930941

Overview
NameFC930941
Unique NameFC930941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: ASO_TOBAC (L-ascorbate oxidase OS=Nicotiana tabacum GN=AAO PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 54/176 (30.68%), Postives = 77/176 (43.75%), Query Frame = 2
Query:  179 MASYSSICCLLLVFMLVSCTRGESPY----RFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNAL-DEPFLISWNGVQQRRNSWQDGVYG-TNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWYKK 688
            MAS   +   LL  +L+  +   S      R F W+V Y    P G +   + INGQFPGP+I A   D + + + N L  E  +I W+G++Q    W DG    + C I P + F Y  +V D+ G+YFY                          PF    G+F +L  DW+ K
Sbjct:    1 MASLGFLFFFLLPLILLELSSSRSVMAAKTRHFKWDVEYIHWSPDGEESVVMGINGQFPGPTIRAKAGDTVAVHLTNKLHTEGVVIHWHGIRQIGTPWADGTAAISQCAINPGETFLYRFKV-DKAGTYFYHGHYGMQRSAGLYGSLIVEVGEGEKEPFHYD-GEFNLLLSDWWHK 174          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC17_ARATH (Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 40/145 (27.59%), Postives = 67/145 (46.21%), Query Frame = 2
Query:  293 YPLGVKQQGIL----------INGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWYKKIT 694
            Y L +K Q +           +NGQFPGP + A   D ++I V N +     + W+G++Q R+ W DG  Y T CPI   +++ Y   +  Q G+ +Y   +++              R  +P PF  P  +  ++ G+W+   T
Sbjct:   27 YTLEIKMQNVTRLCHTKSLVSVNGQFPGPKLIAREGDQVLIKVVNQVPNNISLHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNYTIVGQRGTLWYHAHISWLRSTVYGPLIILPKRG-VPYPFAKPHKEVPMIFGEWFNADT 170          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC25_ORYSJ (Laccase-25 OS=Oryza sativa subsp. japonica GN=LAC25 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 35/120 (29.17%), Postives = 55/120 (45.83%), Query Frame = 2
Query:  326 INGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWY 682
            +NGQ PGP+I A   D +++ + N       + W+GV QR   W DG    T CP+ P  N+TY   V  Q G+ ++   ++FH                   PF  P  +  ++ G+W+
Sbjct:   49 VNGQLPGPTIYAREGDTVVVHLVNTSPYSMTLHWHGVLQRGTPWADGPAMVTQCPVQPGGNYTYRFNVDGQEGTLWWHAHVSFHRATVYGALVIRPRGGAKAYPFPKPDKEHVVILGEWW 168          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC4_ORYSJ (Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 42/164 (25.61%), Postives = 75/164 (45.73%), Query Frame = 2
Query:  206 LLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWYKKIT 694
            LL   +L+   + +   R + +NV   +   L   +  + +NGQ PGP + A   D ++I V N +     + W+GV+Q R  W DG  Y T CPI   +++ Y   V  Q G+ ++   +++              +  +P PF  P  +  ++ G+W+   T
Sbjct:   14 LLAASLLLLIVQAQGITRHYEFNVQMANATRLCNTKSMVTVNGQCPGPELVAREGDRVVIRVTNNVAHNISLHWHGVRQVRTGWADGPAYITQCPIQTGQSYVYNFTVAGQRGTLWWHAHISW-LRATVYGALVILPKLGVPYPFPAPHKEVPVIFGEWWNADT 176          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC12_ORYSJ (Laccase-12/13 OS=Oryza sativa subsp. japonica GN=LAC12 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 47/176 (26.70%), Postives = 84/176 (47.73%), Query Frame = 2
Query:  179 MASYSSI--CCLLLV-FMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWYKKIT 694
            MA+ SS+  CCLL+   M +S    E+  R + ++V    +  L   +  + +NGQ+PGP++ A   D++ ++V N       I W+G++Q  + W DG  Y T CPI P  ++ Y   +  Q G+ ++   +++                 +  PF  P  +  I+ G+W+   T
Sbjct:    1 MAAASSVLRCCLLVAALMTLSAMGAEAITRQYLFDVQTTSVTRLCSTKSIVTVNGQYPGPTLFAREGDHVEVTVVNHSPYNMSIHWHGIRQLLSGWADGPSYITQCPIQPGGSYVYRFTITGQRGTLWWHAHISWLRATVHGPMVILPPAG-VGYPFPAPHEEVPIMFGEWWNNDT 175          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC8_ORYSJ (Laccase-8 OS=Oryza sativa subsp. japonica GN=LAC8 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 37/121 (30.58%), Postives = 52/121 (42.98%), Query Frame = 2
Query:  329 NGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDGVYG-TNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWYKK 688
            N Q PGP+IE    D L++   N    P  + W+GV Q R+ W DG    T CPI P  NFTY   +  Q G+ ++    +                     PF  P  +  IL G+W+ +
Sbjct:   48 NQQLPGPTIEVTEGDTLVVHAVNDSPYPLSLHWHGVYQLRSGWNDGANKITQCPIQPSGNFTYRFNITGQEGTLWWHAHSSLLRATIYGALIIKPRNGPSGYPFPEPYEEIPILLGEWWNR 168          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC23_ORYSJ (Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC23 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 42/126 (33.33%), Postives = 63/126 (50.00%), Query Frame = 2
Query:  179 MASYSSICCLLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFY 553
            M S    C LL + +L S    +  Y  F    T   +  L   Q  + +NGQFPGP++E    D+LII++ N       + W+GV+Q R  W DG  Y T CP+ P +++ Y   V  Q G+ ++
Sbjct:    1 MGSRGCSCWLLSLALLCSLAAAKEQYHEFVIRET--TVKRLCKSQSIMTVNGQFPGPTLEIKEGDSLIINLINRGRYNVTLHWHGVRQMRTGWSDGPEYVTQCPVRPGQSYRYRFTVAAQEGTLWW 124          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC2_ARATH (Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 44/150 (29.33%), Postives = 69/150 (46.00%), Query Frame = 2
Query:  257 RFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLI-------PVPFDPPAGDFTILAGDWY 682
            R + +++   +I  L   +  + +NG+FPGP + A   DNL I V N +     I W+G++Q R+ W DG  Y T CPI   +++ Y   V  Q G+ ++   + +               PLI       P PF  P     IL G+W+
Sbjct:   30 RHYQFDIQLKNITRLCKTKTIVTVNGKFPGPRVTAREGDNLQIKVVNHVSNNISIHWHGIRQLRSGWADGPSYVTQCPIRMGQSYVYNFTVTGQRGTLWWHAHIQWMRATVYG--------PLIILPKLHQPYPFPKPYKQVPILFGEWF 171          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC4_TRAVI (Laccase-4 OS=Trametes villosa GN=LCC4 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 57/199 (28.64%), Postives = 79/199 (39.70%), Query Frame = 2
Query:  179 MASYSSICCLLLV---FMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFL-----ISWNGVQQRRNSWQDGVYGTN-CPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDF-------TILAGDWYKKITLI*KHFDSGSD 727
            M  +SS+C L  V   F  VS   G       +  ++ GD+ P G  +  +L NG FPGP I     DN  I+V + L    +     I W+G  Q+  +W DG    N CPI    +F Y     DQ G+++Y      H               ++  P DP A  +        I   DWY     +   F  GSD
Sbjct:    1 MGRFSSLCALTAVIHSFGRVSAAIGPVT----DLTISNGDVSPDGFTRAAVLANGVFPGPLITGNKGDNFQINVIDNLSNETMLKSTSIHWHGFFQKGTNWADGAAFVNQCPIATGNSFLYDFTATDQAGTFWY------HSHLSTQYCDGLRGPMVVYDPSDPHADLYDVDDETTIITLSDWYHTAASLGAAFPIGSD 189          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC5_ORYSJ (Putative laccase-5 OS=Oryza sativa subsp. japonica GN=LAC5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 53/183 (28.96%), Postives = 77/183 (42.08%), Query Frame = 2
Query:  170 VREMASYSSICCLLLVF--MLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGS---YFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFD--PPAGDFTILAGDWYKKIT 694
            +R   S SS C  L  F  +L   T      R + +NV   ++  L V +    +NGQFPGP +     D L++ V N ++      W+G+ Q RN W DG  Y T CPI    ++ Y   V  Q G+   + +F  L  H                 P P+   PP     I+ G+W+   T
Sbjct:    7 LRNAGSSSSACRFLAAFAVLLALPTLTAGLTRHYTFNVQMTNVTRLCVTKSIPTVNGQFPGPKLVVREGDRLVVKVHNHMNYNVSFHWHGILQLRNGWADGPSYITQCPIQGGGSYVYDFTVTGQRGTLWWHAHFSWLRVHLYGPLVILPKRGEGFPFPRPYKELPP-----IMFGEWFNADT 184          
The following BLAST results are available for this feature:
BLAST of FC930941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ASO_TOBAC2.185e-1230.68L-ascorbate oxidase OS=Nicotiana tabacum GN=AAO PE... [more]
LAC17_ARATH2.854e-1227.59Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 S... [more]
LAC25_ORYSJ3.728e-1229.17Laccase-25 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC4_ORYSJ6.359e-1225.61Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 ... [more]
LAC12_ORYSJ8.305e-1226.70Laccase-12/13 OS=Oryza sativa subsp. japonica GN=L... [more]
LAC8_ORYSJ1.085e-1130.58Laccase-8 OS=Oryza sativa subsp. japonica GN=LAC8 ... [more]
LAC23_ORYSJ1.085e-1133.33Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC2_ARATH1.417e-1129.33Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=... [more]
LAC4_TRAVI2.416e-1128.64Laccase-4 OS=Trametes villosa GN=LCC4 PE=3 SV=1[more]
LAC5_ORYSJ3.156e-1128.96Putative laccase-5 OS=Oryza sativa subsp. japonica... [more]

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Properties
Property NameValue
Genbank descriptionC34110F10EF PostHarvP1 Citrus clementina cDNA clone C34110F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930941 ID=FC930941; Name=FC930941; organism=Citrus clementina; type=EST; length=738bp
GACCAAGCAAAAAAGAAAAAGAGAGAGAAAAAGAAAAAAAAAACTAAAGT
TGAGATAGTGAGGTAGTGATTGATATGGCTTTACAGGGATAAAGAAGTTG
GAAACTCTCTTTCTTTTAGTTATTTTTGTTACCATCTATTCTTGTTTAAG
TTTTTGCTCAAGGTTGAGTGTGAGGGAGATGGCTAGTTATAGCAGTATAT
GTTGTTTGCTTTTAGTGTTTATGCTTGTGAGTTGCACTAGAGGTGAAAGT
CCTTACAGATTTTTTAACTGGAATGTTACATACGGTGATATTTATCCTCT
TGGTGTTAAACAACAGGGGATATTGATTAATGGGCAATTTCCAGGGCCTT
CCATTGAGGCTGTGACCAATGATAACTTGATTATCAGTGTTTTCAATGCC
TTGGATGAACCATTTCTCATCTCTTGGAATGGTGTCCAGCAGAGAAGGAA
CTCTTGGCAAGATGGAGTTTATGGCACAAACTGCCCAATCCCTCCAGAAA
AAAACTTCACATATGTTCTACAAGTCAAGGATCAAATTGGTAGCTACTTC
TATTTCCCCTCTCTTGCTTTTCACAAAGCTGCAGGTGGCTATGGTGGCAT
AAAAATTGCAAGCCGACCACTTATTCCTGTGCCCTTTGATCCTCCTGCTG
GAGATTTCACCATTCTTGCTGGAGACTGGTACAAGAAAATCACACTGATT
TGAAAGCATTTTGACAGTGGGAGTGATCTTCCTTTCCT
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