FC930941

Overview
NameFC930941
Unique NameFC930941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC24_ORYSJ (Laccase-24 OS=Oryza sativa subsp. japonica GN=LAC24 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 35/121 (28.93%), Postives = 54/121 (44.63%), Query Frame = 2
Query:  326 INGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWYK 685
            +NGQ PGP+I A   D +++ + N       I W+G+ QR   W DG    T CP+ P  N+TY   V  Q G+ ++    +F                    PF  P  +  ++ G+W+K
Sbjct:   50 VNGQLPGPTIVATEGDTVVVHMVNESPYNMTIHWHGIFQRGTPWADGPAMVTQCPVRPGGNYTYRFNVTGQEGTLWWHSHFSFLRATVYGALIIKPRGGAKAYPFPVPDEEVVVILGEWWK 170          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC1_ORYSJ (Putative laccase-1 OS=Oryza sativa subsp. japonica GN=LAC1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 36/100 (36.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  257 RFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFY 553
            R +++ +T  +   L  ++  + +NGQFPGP+I A   D +I++V N  ++   I W+GV Q RN W DG  + T CPI P  NFTY + + ++ G+ ++
Sbjct:   32 RHYDFFITETNYTRLCHEKSILTVNGQFPGPTIYARKGDFIIVNVHNNGNKNITIHWHGVDQPRNPWSDGPEFITQCPIRPGGNFTYQVILFEEEGTLWW 131          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC12_ARATH (Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 37/125 (29.60%), Postives = 58/125 (46.40%), Query Frame = 2
Query:  311 QQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWY 682
            +  I +NG FPGP++E    D L + V N       I W+GV+Q R  W DG  + T CPI P K++TY   ++ Q G+ ++    ++               P    PF  P     ++ G+W+
Sbjct:   45 RNAITVNGMFPGPTLEVNNGDTLEVKVHNRARYNITIHWHGVRQIRTGWADGPEFVTQCPIRPGKSYTYRFTIQGQEGTLWWHAHSSW-LRATVYGALIIHPTPGSSFPFPKPDRQTALMLGEWW 168          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC3_ORYSJ (Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 45/169 (26.63%), Postives = 74/169 (43.79%), Query Frame = 2
Query:  179 MASYSSICCLLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIPVPFDPPAGDFTILAGDWY 682
            MAS SS   L L+   V      +      + V    +  L      I +NGQ PGP++E    D ++I+V N       I W+G++Q R  W DG  + T CPI P  ++ Y   ++ Q G+ ++    ++              R     PF+ PA +  ++ G+W+
Sbjct:    1 MASSSSSRLLFLLSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLEVREGDTVVINVVNHAQYNVTIHWHGIRQFRTGWADGPEFVTQCPIKPGGSYKYRFTIEGQEGTLWWHAHSSW-LRATVYGALIIRPRENKTYPFEKPAREVPLILGEWW 168          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC1_AGABI (Laccase-1 OS=Agaricus bisporus GN=lcc1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 42/127 (33.07%), Postives = 67/127 (52.76%), Query Frame = 2
Query:  206 LLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFL-----ISWNGVQQRRNSWQDGVYGTN-CPIPPEKNFTYVLQVKDQIGSYFYFPSLA 568
            L+LV   +S    ++  R F++++    + P G ++  ++ING+FPG  I+    D++ I + N L  P +     I W+G  Q R S QDG    N CP PP   FTY   V +Q G+++Y   L+
Sbjct:    7 LVLVAACISSVVAKT--RTFDFDLVNTRLAPDGFERDTVVINGEFPGTLIQVNKGDSVRIPLHNKLTSPTMRRSVSIHWHGFFQARTSGQDGPSFVNQCPQPPNTTFTYEFSVAEQSGTFWYHSHLS 131          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC17_ORYSJ (Putative laccase-17 OS=Oryza sativa subsp. japonica GN=LAC17 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 41/126 (32.54%), Postives = 62/126 (49.21%), Query Frame = 2
Query:  179 MASYSSICCLLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFY 553
            M S    C LL + +L S    +  Y  F    T   +  L      + +NGQFPGP++E    D+LII++ N       + W+GV+Q R  W DG  Y T CP+ P +++ Y   V  Q G+ ++
Sbjct:    1 MPSRGCSCWLLSLALLCSLAAAKEQYHEFVIRET--TVKRLCKSHNIMTVNGQFPGPTLEINEGDSLIINLINRGRYNMTLHWHGVRQMRTGWSDGPEYVTQCPVRPGQSYRYRFTVAAQEGTLWW 124          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: LAC5_ARATH (Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 45/171 (26.32%), Postives = 71/171 (41.52%), Query Frame = 2
Query:  194 SICCLL--LVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNALDEPFLISWNGVQQRRNSWQDG-VYGTNCPIPPEKNFTYVLQVKDQIGSYFYFPSLAFHXXXXXXXXXXXXSRPLIP-----VPFDPPAGDFTILAGDWY 682
            S+ C +  + F+L S     +      + +    +  L      I +NG FPGP +     D L++ V N       I W+GV+Q R  W DG  + T CPI P  ++TY   ++ Q G      +L +H            S  + P      PF  P  +  +L G+W+
Sbjct:    6 SLLCFISFVAFLLFSSVAEANKAHHHEFIIQATKVKRLCETHNSITVNGMFPGPMLVVNNGDTLVVKVINRARYNITIHWHGVRQMRTGWADGPEFVTQCPIRPGSSYTYRFTIQGQEG------TLWWHAHSSWLRATVYGSLLVFPPAGSSYPFTKPHRNVPLLLGEWW 170          
BLAST of FC930941 vs. ExPASy Swiss-Prot
Match: ASO_CUCSA (L-ascorbate oxidase OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 40/121 (33.06%), Postives = 62/121 (51.24%), Query Frame = 2
Query:  197 ICCLLLVFMLVSCTRGESPYRFFNWNVTYGDIYPLGVKQQGILINGQFPGPSIEAVTNDNLIISVFNAL-DEPFLISWNGVQQRRNSWQDGVYG-TNCPIPPEKNFTYVLQVKDQIGSYFY 553
            +  ++  F +     G    + + W+V Y    P  V+   + ING+FPGP+I A   D +++ + N L  E  +I W+G+ QR   W DG    + C I P + FTY   V D+ G+YFY
Sbjct:   19 VLSIIFGFGITLSEAGFPKIKHYKWDVEYMFWSPDCVENIVMGINGEFPGPTIRANAGDIVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFTYRF-VVDKAGTYFY 138          
The following BLAST results are available for this feature:
BLAST of FC930941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
LAC24_ORYSJ3.156e-1128.93Laccase-24 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC1_ORYSJ3.156e-1136.00Putative laccase-1 OS=Oryza sativa subsp. japonica... [more]
LAC12_ARATH4.122e-1129.60Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 S... [more]
LAC3_ORYSJ5.383e-1126.63Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 ... [more]
LAC1_AGABI5.383e-1133.07Laccase-1 OS=Agaricus bisporus GN=lcc1 PE=1 SV=1[more]
LAC17_ORYSJ5.383e-1132.54Putative laccase-17 OS=Oryza sativa subsp. japonic... [more]
LAC5_ARATH7.030e-1126.32Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=... [more]
ASO_CUCSA9.182e-1133.06L-ascorbate oxidase OS=Cucumis sativus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34110F10EF PostHarvP1 Citrus clementina cDNA clone C34110F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930941 ID=FC930941; Name=FC930941; organism=Citrus clementina; type=EST; length=738bp
GACCAAGCAAAAAAGAAAAAGAGAGAGAAAAAGAAAAAAAAAACTAAAGT
TGAGATAGTGAGGTAGTGATTGATATGGCTTTACAGGGATAAAGAAGTTG
GAAACTCTCTTTCTTTTAGTTATTTTTGTTACCATCTATTCTTGTTTAAG
TTTTTGCTCAAGGTTGAGTGTGAGGGAGATGGCTAGTTATAGCAGTATAT
GTTGTTTGCTTTTAGTGTTTATGCTTGTGAGTTGCACTAGAGGTGAAAGT
CCTTACAGATTTTTTAACTGGAATGTTACATACGGTGATATTTATCCTCT
TGGTGTTAAACAACAGGGGATATTGATTAATGGGCAATTTCCAGGGCCTT
CCATTGAGGCTGTGACCAATGATAACTTGATTATCAGTGTTTTCAATGCC
TTGGATGAACCATTTCTCATCTCTTGGAATGGTGTCCAGCAGAGAAGGAA
CTCTTGGCAAGATGGAGTTTATGGCACAAACTGCCCAATCCCTCCAGAAA
AAAACTTCACATATGTTCTACAAGTCAAGGATCAAATTGGTAGCTACTTC
TATTTCCCCTCTCTTGCTTTTCACAAAGCTGCAGGTGGCTATGGTGGCAT
AAAAATTGCAAGCCGACCACTTATTCCTGTGCCCTTTGATCCTCCTGCTG
GAGATTTCACCATTCTTGCTGGAGACTGGTACAAGAAAATCACACTGATT
TGAAAGCATTTTGACAGTGGGAGTGATCTTCCTTTCCT
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