FC930944
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_CAEEL (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.422e-31 Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 2 Query: 356 GWRDAEEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670 G +A + TEHLGLPVF +V+EA+ +T A+ASVIYVP + LVVCITEGIPQHDMVRVK+ L +Q+KTRL+GP + ++C++ + G Sbjct: 62 GGVNANKAGTEHLGLPVFKNVSEARNKTGADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGIPQHDMVRVKSRLLKQNKTRLVGPNCPGIISADQCKIGIMPG 166 HSP 2 Score: 56.225 bits (134), Expect = 3.422e-31 Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 3 Query: 261 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 ++K+T+VI QG TGK GTFH +Q +EY TK+VGGV K G Sbjct: 30 INKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAG 70
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_ECOLI (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli (strain K12) GN=sucD PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 2.177e-30 Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 3 Query: 252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 ++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGG Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGG 45 HSP 2 Score: 75.485 bits (184), Expect = 2.177e-30 Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 2 Query: 374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLAL 661 +G T HLGLPVFN+V EA A T A ASVIYVP PF + L++ ITEGIP DM+ VK L+ ++ R+IGP +C++ + Sbjct: 43 KGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGI 137
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_ECOL6 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O6 GN=sucD PE=3 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 2.177e-30 Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 3 Query: 252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 ++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGG Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGG 45 HSP 2 Score: 75.485 bits (184), Expect = 2.177e-30 Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 2 Query: 374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLAL 661 +G T HLGLPVFN+V EA A T A ASVIYVP PF + L++ ITEGIP DM+ VK L+ ++ R+IGP +C++ + Sbjct: 43 KGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGI 137
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_ECO57 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O157:H7 GN=sucD PE=3 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 2.177e-30 Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 3 Query: 252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 ++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGG Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGG 45 HSP 2 Score: 75.485 bits (184), Expect = 2.177e-30 Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 2 Query: 374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLAL 661 +G T HLGLPVFN+V EA A T A ASVIYVP PF + L++ ITEGIP DM+ VK L+ ++ R+IGP +C++ + Sbjct: 43 KGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGI 137
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_BACSU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Bacillus subtilis GN=sucD PE=1 SV=3) HSP 1 Score: 84.3445 bits (207), Expect = 8.142e-30 Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 2 Query: 374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670 +G TE G+PVFN+VAEA T ANASVIYVP PF LDLV+CITE IP DMV+VK + + KTRLIGP E+C++ + G Sbjct: 43 KGGTEAEGVPVFNTVAEAVQTTGANASVIYVPAPFAADAIMEAVDAELDLVICITEHIPVLDMVKVKRFMEGK-KTRLIGPNCPGVITPEECKIGIMPG 140 HSP 2 Score: 66.2402 bits (160), Expect = 8.142e-30 Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 3 Query: 252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 +VF++K+TRVI QGITG FHT+Q +EYGT +VGGVTP KGG Sbjct: 2 SVFINKDTRVIVQGITGSTALFHTKQMLEYGTNIVGGVTPGKGG 45
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus GN=sucD PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.055e-29 Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 2 Query: 374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVK-AALNRQSKTRLIGP 616 +G E G+PVFN+V EA ET AN S+I+VP PF ++LVVCITEGIP DM+ VK L +L+GP Sbjct: 43 KGGMEVEGIPVFNTVKEAVKETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKLVGP 124 HSP 2 Score: 63.929 bits (154), Expect = 2.055e-29 Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 3 Query: 252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGL 386 A+ V+K+T+V+ QGITGK G+FH +Q EYGT++V GVTP KGG+ Sbjct: 2 AILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQVVAGVTPGKGGM 46 HSP 3 Score: 36.5798 bits (83), Expect = 2.055e-29 Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 1 Query: 616 HCPGIIKPGEM*IGIMPGYIHK 681 +CPG+I PGE +GIMPG+I K Sbjct: 125 NCPGVITPGEAKVGIMPGHIFK 146
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_SCHPO (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC16E8.17c PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.336e-29 Identity = 46/115 (40.00%), Postives = 64/115 (55.65%), Query Frame = 2 Query: 356 GWRDAEEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLAL---------CLGI 673 G + ++ T HLG PVF ++ EA ETKA+AS ++VPPP + L+V ITEGIPQHDM+RV L QSK+RL+GP +C++ + C+GI Sbjct: 69 GGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAAGAIEEAIAAEVPLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMPSHIHKPGCIGI 183 HSP 2 Score: 61.6178 bits (148), Expect = 2.336e-29 Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 3 Query: 249 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 P + ++ +T+VI QG TGK GTFH + A++YGTK+VGG PKK G Sbjct: 33 PNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTKVVGGTNPKKAG 77
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_PSEAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Pseudomonas aeruginosa GN=sucD PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 5.167e-29 Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 2 Query: 374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670 +G T HLGLPVFN+V EA T A ASVIYVP PF + L+VCITEGIP DM+ K + + RLIGP +C++ + G Sbjct: 43 KGGTTHLGLPVFNTVKEAVEATGAEASVIYVPAPFCKDSILEAAFGGIKLIVCITEGIPTLDMLDAKVKCD-ELGVRLIGPNCPGVITPGECKIGIMPG 140 HSP 2 Score: 73.559 bits (179), Expect = 5.167e-29 Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 3 Query: 252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 +V ++K+T+VICQG TG GTFH+EQAI YGTKMVGGVTP KGG Sbjct: 2 SVLINKDTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGG 45
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_HAEIN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Haemophilus influenzae GN=sucD PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.760e-29 Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 2 Query: 374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLAL 661 +G T HLGLPVFN+V EA T A+VIYVP F + L+VCITEGIP DM++VK LN ++ +IGP ++C++ + Sbjct: 43 KGGTTHLGLPVFNTVREAVENTGVTATVIYVPASFCKDAIIEAIDAGIQLIVCITEGIPTLDMLKVKQKLN-ETGVVMIGPNCPGVITPDECKIGI 137 HSP 2 Score: 73.1738 bits (178), Expect = 8.760e-29 Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 3 Query: 252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 A+ +DKNT+VICQG TG GTFH+EQA+ YGT++VGGV+P KGG Sbjct: 2 AILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKGG 45
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_STAAW (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MW2) GN=sucD PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.263e-28 Identity = 43/92 (46.74%), Postives = 55/92 (59.78%), Query Frame = 2 Query: 395 GLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670 G+PVFN+V EAK ET A SVIYVP PF LD+V+CITE IP DMV+VK L + KTRL+GP ++C++ + G Sbjct: 50 GVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPG 140 HSP 2 Score: 66.2402 bits (160), Expect = 4.263e-28 Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 3 Query: 252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 +VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGG 45 The following BLAST results are available for this feature:
BLAST of FC930944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930944 ID=FC930944; Name=FC930944; organism=Citrus clementina; type=EST; length=682bpback to top |