FC930944

Overview
NameFC930944
Unique NameFC930944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_CAEEL (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.422e-31
Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 2
Query:  356 GWRDAEEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            G  +A +  TEHLGLPVF +V+EA+ +T A+ASVIYVP               + LVVCITEGIPQHDMVRVK+ L +Q+KTRL+GP      + ++C++ +  G
Sbjct:   62 GGVNANKAGTEHLGLPVFKNVSEARNKTGADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGIPQHDMVRVKSRLLKQNKTRLVGPNCPGIISADQCKIGIMPG 166          

HSP 2 Score: 56.225 bits (134), Expect = 3.422e-31
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 3
Query:  261 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            ++K+T+VI QG TGK GTFH +Q +EY TK+VGGV   K G
Sbjct:   30 INKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAG 70          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_ECOLI (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli (strain K12) GN=sucD PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.177e-30
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 3
Query:  252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGG
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGG 45          

HSP 2 Score: 75.485 bits (184), Expect = 2.177e-30
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLAL 661
            +G T HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGP         +C++ +
Sbjct:   43 KGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGI 137          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_ECOL6 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O6 GN=sucD PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.177e-30
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 3
Query:  252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGG
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGG 45          

HSP 2 Score: 75.485 bits (184), Expect = 2.177e-30
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLAL 661
            +G T HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGP         +C++ +
Sbjct:   43 KGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGI 137          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_ECO57 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O157:H7 GN=sucD PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.177e-30
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 3
Query:  252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGG
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGG 45          

HSP 2 Score: 75.485 bits (184), Expect = 2.177e-30
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLAL 661
            +G T HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGP         +C++ +
Sbjct:   43 KGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGI 137          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_BACSU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Bacillus subtilis GN=sucD PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 8.142e-30
Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 2
Query:  374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            +G TE  G+PVFN+VAEA   T ANASVIYVP PF            LDLV+CITE IP  DMV+VK  +  + KTRLIGP        E+C++ +  G
Sbjct:   43 KGGTEAEGVPVFNTVAEAVQTTGANASVIYVPAPFAADAIMEAVDAELDLVICITEHIPVLDMVKVKRFMEGK-KTRLIGPNCPGVITPEECKIGIMPG 140          

HSP 2 Score: 66.2402 bits (160), Expect = 8.142e-30
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 3
Query:  252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            +VF++K+TRVI QGITG    FHT+Q +EYGT +VGGVTP KGG
Sbjct:    2 SVFINKDTRVIVQGITGSTALFHTKQMLEYGTNIVGGVTPGKGG 45          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus GN=sucD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.055e-29
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 2
Query:  374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVK-AALNRQSKTRLIGP 616
            +G  E  G+PVFN+V EA  ET AN S+I+VP PF            ++LVVCITEGIP  DM+ VK   L      +L+GP
Sbjct:   43 KGGMEVEGIPVFNTVKEAVKETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKLVGP 124          

HSP 2 Score: 63.929 bits (154), Expect = 2.055e-29
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGL 386
            A+ V+K+T+V+ QGITGK G+FH +Q  EYGT++V GVTP KGG+
Sbjct:    2 AILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQVVAGVTPGKGGM 46          

HSP 3 Score: 36.5798 bits (83), Expect = 2.055e-29
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 1
Query:  616 HCPGIIKPGEM*IGIMPGYIHK 681
            +CPG+I PGE  +GIMPG+I K
Sbjct:  125 NCPGVITPGEAKVGIMPGHIFK 146          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_SCHPO (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC16E8.17c PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.336e-29
Identity = 46/115 (40.00%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  356 GWRDAEEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLAL---------CLGI 673
            G  + ++  T HLG PVF ++ EA  ETKA+AS ++VPPP             + L+V ITEGIPQHDM+RV   L  QSK+RL+GP         +C++ +         C+GI
Sbjct:   69 GGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAAGAIEEAIAAEVPLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMPSHIHKPGCIGI 183          

HSP 2 Score: 61.6178 bits (148), Expect = 2.336e-29
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 3
Query:  249 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            P + ++ +T+VI QG TGK GTFH + A++YGTK+VGG  PKK G
Sbjct:   33 PNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTKVVGGTNPKKAG 77          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_PSEAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Pseudomonas aeruginosa GN=sucD PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.167e-29
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 2
Query:  374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            +G T HLGLPVFN+V EA   T A ASVIYVP PF            + L+VCITEGIP  DM+  K   + +   RLIGP         +C++ +  G
Sbjct:   43 KGGTTHLGLPVFNTVKEAVEATGAEASVIYVPAPFCKDSILEAAFGGIKLIVCITEGIPTLDMLDAKVKCD-ELGVRLIGPNCPGVITPGECKIGIMPG 140          

HSP 2 Score: 73.559 bits (179), Expect = 5.167e-29
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 3
Query:  252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            +V ++K+T+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGG
Sbjct:    2 SVLINKDTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGG 45          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_HAEIN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Haemophilus influenzae GN=sucD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.760e-29
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 2
Query:  374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLAL 661
            +G T HLGLPVFN+V EA   T   A+VIYVP  F            + L+VCITEGIP  DM++VK  LN ++   +IGP        ++C++ +
Sbjct:   43 KGGTTHLGLPVFNTVREAVENTGVTATVIYVPASFCKDAIIEAIDAGIQLIVCITEGIPTLDMLKVKQKLN-ETGVVMIGPNCPGVITPDECKIGI 137          

HSP 2 Score: 73.1738 bits (178), Expect = 8.760e-29
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 3
Query:  252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            A+ +DKNT+VICQG TG  GTFH+EQA+ YGT++VGGV+P KGG
Sbjct:    2 AILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKGG 45          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_STAAW (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MW2) GN=sucD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.263e-28
Identity = 43/92 (46.74%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  395 GLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GP        ++C++ +  G
Sbjct:   50 GVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPG 140          

HSP 2 Score: 66.2402 bits (160), Expect = 4.263e-28
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 3
Query:  252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGG 45          
The following BLAST results are available for this feature:
BLAST of FC930944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SUCA_CAEEL3.422e-3148.57Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_ECOLI2.177e-3075.00Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECOL62.177e-3075.00Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECO572.177e-3075.00Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_BACSU8.142e-3049.49Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_AQUAE2.055e-2946.34Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_SCHPO2.336e-2940.00Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_PSEAE5.167e-2943.43Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_HAEIN8.760e-2941.67Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAW4.263e-2846.74Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionC34110G01EF PostHarvP1 Citrus clementina cDNA clone C34110G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930944 ID=FC930944; Name=FC930944; organism=Citrus clementina; type=EST; length=682bp
CGGGGGAGAATCTTTTTCTTCAATATATTTTGGGAAAAAAGAGAGAGACG
AACTCGAGGGAGAAAATCAGCGAATCAGATTAAAGTGAAGTGAATCAAAT
GGCTCGCCAAGCCTTGGCCAAGCTGATCGGCTCGATCGGATGTCGCAGAC
CCTCTACTGCTTCTTCCGTTTCACATTACAGATTATCAACGTCGGCGGCG
CCGGCGGCCCACTCTCGATATTATGGGTCGTCGGCGGCGGCGTCTCAGCC
GGCAGTTTTCGTCGACAAAAACACTCGAGTTATATGCCAAGGCATCACCG
GAAAAAACGGCACGTTCCATACCGAACAAGCCATCGAATACGGCACCAAA
ATGGTGGGTGGCGTGACGCCGAAGAAGGGTGGACTGAGCACTTGGGACTT
CCTGTATTCAACTCGGTTGCTGAAGCTAAGGCTGAAACGAAGGCTAATGC
TTCTGTCATTTATGTTCCTCCGCCATTTGCTGCTGCTGCTATCATGGAGG
CTATGGAGGCTGAGTTGGATCTTGTCGTCTGTATCACCGAAGGAATCCCT
CAACACGATATGGTGCGAGTGAAAGCTGCTCTAAACAGGCAATCTAAAAC
TCGGCTGATTGGTCCCACTGCCCTGGTATCATCAAACCTGGAGAAATGTA
GATTGGCATTATGCCTGGGTATATTCACAAAC
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