FC930944

Overview
NameFC930944
Unique NameFC930944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_RICPR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia prowazekii GN=sucD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 52/106 (49.06%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  353 GGWRDAEEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            GG    + G T HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DM++VK AL   SKTRLIGP         +C++ +  G
Sbjct:   37 GGVTPGKGGHT-HLNLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMIKVKRAL-IGSKTRLIGPNCPGVITPGECKIGIMPG 140          

HSP 2 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 3
Query:  252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG
Sbjct:    2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGG 45          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_RICFE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis GN=sucD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 53/106 (50.00%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  353 GGWRDAEEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            GG    + G T HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DMV+VK AL   SKTRLIGP         +C++ +  G
Sbjct:   37 GGVTPGKGGHT-HLDLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRAL-VGSKTRLIGPNCPGVITPGECKIGIMPG 140          

HSP 2 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 3
Query:  252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGLSTWDF-LYST 413
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG +  D  +Y+T
Sbjct:    2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNT 56          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_RICCN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia conorii GN=sucD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 53/106 (50.00%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  353 GGWRDAEEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            GG    + G T HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DMV+VK AL   SKTRLIGP         +C++ +  G
Sbjct:   37 GGVTPGKGGHT-HLDLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRAL-VGSKTRLIGPNCPGVITPGECKIGIMPG 140          

HSP 2 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 3
Query:  252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGLSTWDF-LYST 413
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG +  D  +Y+T
Sbjct:    2 AILINKKTQVICQGFTGLQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNT 56          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_NEUCR (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Neurospora crassa GN=8D4.130 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 47/106 (44.34%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  353 GGWRDAEEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            GG    + G T HL  PVF++V+EA  ET A A+ I+VPPP             + L VCITEGIPQHDMVR+ + L  QSKTRL+GP         +C++ +  G
Sbjct:   71 GGTNPKKAGQT-HLDRPVFSNVSEAVKETGATATAIFVPPPLAAAGIEEALQAEIPLAVCITEGIPQHDMVRITSMLKTQSKTRLVGPNCPGIIAPGQCKIGIMPG 175          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_YEAST (Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=LSC1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 44/88 (50.00%), Postives = 51/88 (57.95%), Query Frame = 2
Query:  353 GGWRDAEEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGP 616
            GG    + G T HLG PVF SV +A  ET A AS I+VPPP             + L VCITEGIPQHDM+ +   L  Q KTRL+GP
Sbjct:   65 GGTNPKKAGQT-HLGQPVFASVKDAIKETGATASAIFVPPPIAAAAIKESIEAEIPLAVCITEGIPQHDMLYIAEMLQTQDKTRLVGP 151          
The following BLAST results are available for this feature:
BLAST of FC930944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SUCD_RICPR1.278e-1649.06Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICFE1.278e-1650.00Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICCN1.278e-1650.00Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_NEUCR1.278e-1644.34Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA_YEAST4.111e-1550.00Succinyl-CoA ligase [ADP-forming] subunit alpha, m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110G01EF PostHarvP1 Citrus clementina cDNA clone C34110G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930944 ID=FC930944; Name=FC930944; organism=Citrus clementina; type=EST; length=682bp
CGGGGGAGAATCTTTTTCTTCAATATATTTTGGGAAAAAAGAGAGAGACG
AACTCGAGGGAGAAAATCAGCGAATCAGATTAAAGTGAAGTGAATCAAAT
GGCTCGCCAAGCCTTGGCCAAGCTGATCGGCTCGATCGGATGTCGCAGAC
CCTCTACTGCTTCTTCCGTTTCACATTACAGATTATCAACGTCGGCGGCG
CCGGCGGCCCACTCTCGATATTATGGGTCGTCGGCGGCGGCGTCTCAGCC
GGCAGTTTTCGTCGACAAAAACACTCGAGTTATATGCCAAGGCATCACCG
GAAAAAACGGCACGTTCCATACCGAACAAGCCATCGAATACGGCACCAAA
ATGGTGGGTGGCGTGACGCCGAAGAAGGGTGGACTGAGCACTTGGGACTT
CCTGTATTCAACTCGGTTGCTGAAGCTAAGGCTGAAACGAAGGCTAATGC
TTCTGTCATTTATGTTCCTCCGCCATTTGCTGCTGCTGCTATCATGGAGG
CTATGGAGGCTGAGTTGGATCTTGTCGTCTGTATCACCGAAGGAATCCCT
CAACACGATATGGTGCGAGTGAAAGCTGCTCTAAACAGGCAATCTAAAAC
TCGGCTGATTGGTCCCACTGCCCTGGTATCATCAAACCTGGAGAAATGTA
GATTGGCATTATGCCTGGGTATATTCACAAAC
back to top