FC930953

Overview
NameFC930953
Unique NameFC930953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ESCF3 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ghrB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 59/194 (30.41%), Postives = 90/194 (46.39%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R +L+ +     +E  A                     + G W    G    GS +  K +GIVG+G IG  +A+R    F   I Y +R++ P     F   Y ++  L  ++D + +   LTEETHH+   +    +    + IN GRG ++DEK L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALNARKVLLMHTPTVLTETVADTLMALILATSRRVVEVAERVKAGEWTASIGPDWFGSDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLTEETHHLFGAEQFAKMKSSAIFINAGRGPVVDEKALISALQKGEIHAAGLDVFEREP 267          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: Y752_STAHJ (Putative 2-hydroxyacid dehydrogenase SH0752 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0752 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 64/210 (30.48%), Postives = 100/210 (47.62%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTS---RKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHVPKELLTL 693
            +I+    AG ++VD++  R + I VTN   A +   A                     R   +   G  PL   G  + GK +GI+GLG IGS VAKR   F   I YT    +K+K       Y +++ L  ++D + +  A   + HHMI+ +    +     +IN GRG +++E+ LV  L   ++ GA LDV+E EP + + L +L
Sbjct:   68 KIIANYGAGFNNVDVKYAREKDIDVTNTPKASTASTAELTFGLVLAVARRIVEGDKLSRTQGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVAKRAKAFDMDILYTGPHQKKEKEREIGAKYVDLNTLLENADFITINAAYNPDLHHMIDTEQFKLMKSTAYLINAGRGPIVNEEALVKALEDKQIEGAALDVYEFEPEITEGLKSL 275          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP3 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae (strain 342) GN=ghrB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 58/194 (29.90%), Postives = 91/194 (46.91%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D++    R +L+ +     +E  A                     + G W    G    GS +  K +GIVG+G IG  +A+R    FG  I Y +R++ P     F   Y ++  L  ++D + +   L+EETHH+  +     +    + IN GRG ++DE+ L+  L  GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVEALNARRVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGSDVHHKTLGIVGMGRIGMALAQRAHFGFGMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLSEETHHLFGQAQFAKMKSSAIFINAGRGPVVDEQALIAALQAGEIHAAGLDVFEHEP 267          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: Y606_STAS1 (Putative 2-hydroxyacid dehydrogenase SSP0606 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0606 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.015e-18
Identity = 66/210 (31.43%), Postives = 94/210 (44.76%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHVPKELLTL 693
            +I+    AG ++VD+   R++ I VTN   A +   A                     R   +   G  PL   G  + GK +GI+GLG IGS VA+R   F  +I YT   +K          Y ++  L  ++D + +  A     HH I+K     +     +IN  RG ++ EK LV  L   E+ GA LDVFE EP +  EL TL
Sbjct:   69 KIITNYGAGFNNVDIDYARQQNIDVTNTPKASTNSTAELTFALVLAVARRIPEGDKLCRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRAKAFDMNILYTGPHQKVDKEREIGAKYVDLETLLKNADFVTINAAYNPSLHHQIDKAQFEMMKPTSYLINASRGPIVHEKALVQALKDKEIEGAALDVFEFEPEINDELKTL 276          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_PECCP (Glyoxylate/hydroxypyruvate reductase B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ghrB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 1
Query:  295 GSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPFYA---NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            G+ +  K +GI+G+G IG  VA+R    F   + Y +R+        F A   ++  L A+SD L +   LT ETHH+I ++ +  +    ++IN+GRGA++DE  L   LV+G + GAGLDVF  EP
Sbjct:  136 GTDVHHKTIGILGMGRIGLAVAQRAHFGFSMPVLYNARRHHAEAEQRFNARHCDLDTLLAESDFLCITLPLTTETHHLIGREQLAKMKPSAILINIGRGAVVDEDALTEALVKGTIQGAGLDVFVKEP 263          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP7 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ghrB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 57/194 (29.38%), Postives = 91/194 (46.91%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D++    R +L+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    FG  I Y +R++ P     F   Y ++  L  ++D + +   L+EETHH+  +     +    + IN GRG ++DE+ L+  L  GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVEALNARRVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFGMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLSEETHHLFGQAQFAKMKSSAIFINAGRGPVVDEQALIAALQNGEIHAAGLDVFEHEP 267          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ERWCT (Glyoxylate/hydroxypyruvate reductase B OS=Erwinia carotovora subsp. atroseptica GN=ghrB PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 56/194 (28.87%), Postives = 92/194 (47.42%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPFYA---NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D  ++     +G+++ +     +E  A                     + G W    G+   G+ +  K +GI+G+G IG  VA+R    F   + Y +R+        F A   ++  L A+SD L +   LT ETHH+I ++ +  +    ++IN+GRGA++DE  L   LV+G +  AGLDVF  EP
Sbjct:   70 SVGYDTFNVDALNEKGVILMHTPTVLTETVADTVLALMLASARRVVEVVERVKAGEWKGGVGSDWFGTDVHHKTIGILGMGRIGLAVAQRAHFGFSMPVLYNARRHHAEAEERFNARHCDLDTLLAESDFLCITLPLTAETHHLIGREQLAKMKPSAILINIGRGAVVDEDALTEALVKGTIQAAGLDVFVKEP 263          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ENTS8 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ghrB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  295 GSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            G  +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L A+SD + V   LT+ETHHMI  +    + K  + IN GRG ++DE  L+  L  GE+  AGLDVFE EP
Sbjct:  140 GCDVHHKTLGIVGMGRIGLALAQRAHFGFNMPILYNARRHHSEAEERFNARYCDLDTLLAESDFVCVILPLTDETHHMIGAEQFRKMKKSAIFINAGRGPVVDENALIAALQSGEIHAAGLDVFEQEP 267          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: TKRA_BACSU (Probable 2-ketogluconate reductase OS=Bacillus subtilis GN=yvcT PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 55/200 (27.50%), Postives = 91/200 (45.50%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL-GSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            ++V   + G D+ D++  + RG++ T+      +  A                     R G W       L G  +  + +GI+G+G IG + A+R    F   + Y +R +K          YA +  L   SD +++   LT+ET+HMI +     +    + +N+ RG  +DEK L+  L  G + GAGLDV+E EP
Sbjct:   71 KVVSNQSVGYDNFDIEAMKERGVVGTHTPYTLDDTVADLAFSLILSSARRVAELDRFVRAGKWGTVEEEALFGIDVHHQTLGIIGMGRIGEQAARRAKFGFDMEVLYHNRHRKQETEDSIGVKYAELDTLLEQSDFILLITPLTDETYHMIGEREFKLMKNSAIFVNISRGKTVDEKALIRALQEGWIRGAGLDVYEKEP 270          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ECOL6 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O6 GN=ghrB PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 58/194 (29.90%), Postives = 87/194 (44.85%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y N+  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCNLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267          
The following BLAST results are available for this feature:
BLAST of FC930953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
GHRB_ESCF31.846e-1830.41Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
Y752_STAHJ5.371e-1830.48Putative 2-hydroxyacid dehydrogenase SH0752 OS=Sta... [more]
GHRB_KLEP35.371e-1829.90Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]
Y606_STAS17.015e-1831.43Putative 2-hydroxyacid dehydrogenase SSP0606 OS=St... [more]
GHRB_PECCP9.162e-1838.28Glyoxylate/hydroxypyruvate reductase B OS=Pectobac... [more]
GHRB_KLEP79.162e-1829.38Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]
GHRB_ERWCT2.041e-1728.87Glyoxylate/hydroxypyruvate reductase B OS=Erwinia ... [more]
GHRB_ENTS82.666e-1739.84Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
TKRA_BACSU5.938e-1727.50Probable 2-ketogluconate reductase OS=Bacillus sub... [more]
GHRB_ECOL65.938e-1729.90Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionC34110G10EF PostHarvP1 Citrus clementina cDNA clone C34110G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930953 ID=FC930953; Name=FC930953; organism=Citrus clementina; type=EST; length=693bp
CACGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCAC
CTCCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCA
CCGCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATT
CTTGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGT
GGTCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCAGTGATCGGT
TTGTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCA
ACGTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTC
TGAAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACAT
CAAGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCT
GGCCTTGCTGCTGATAGTGATGTCCTCATTGTGTGTTGTGCTCTGACCGA
GGAAACTCACCACATGATTAACAAGGATGTCATGACAGCACTGGGCAAGG
AAGGGGTGATAATAAATGTTGGGCGCGGTGCTCTTATTGATGAGAAGGAA
CTGGTTCACTTCTTGGTGCGGGGGGAGCTTGGTGGAGCTGGTCTTGATGT
GTTTGAAGACGAGCCTCATGTGCCCAAGGAGCTGCTTACATTG
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