FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_EDWI9 (Glutamyl-tRNA reductase OS=Edwardsiella ictaluri (strain 93-146) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 68/199 (34.17%), Postives = 109/199 (54.77%), Query Frame = 1
Query:   28 NISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            ++  LF+   SV KRVRTET I             LA       S A   +L++GAG+  +LV +HL       M++ NR+ ER  ++ +E+ G E+I  PL+++ +  ADAD+V +STAS  P+  K  V+    ++A      L +DI+VPR++   V D+  A +Y+VDDL  ++  N   R   A++A+ I+ +E
Sbjct:  137 DLERLFQKTFSVAKRVRTETEIGTSAVSVAFAACTLARQIF--ESLARLNVLLVGAGETIELVARHLHQHQVQHMMIANRTRERAQSLADEV-GAEVI--PLADIDARLADADIVISSTASPLPIIGKGMVERA--LKARRNRPMLLVDIAVPRDIEPEVGDLANAYLYSVDDLHAIIQGNMAQRQEAAVQAEHIVQQE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_GEOTN (Glutamyl-tRNA reductase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 67/203 (33.00%), Postives = 110/203 (54.19%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATAR-MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            G  ++ LFK A++  KR  +ET I            ELA        H   + +L+IGAGKMG L  ++L   G  K+ VVNR+ E+   +  + +G     K L E+     +AD+V +ST ++  +  K+   ++ P+E    G  LF +DI+VPR++   +A++ET  +Y++DDL++VVAAN  +R + A   + +I  E
Sbjct:  135 GTILNHLFKQAVTFAKRAHSETGIGAHAVSVSYAAVELAKKIF---GHLNGKHVLIIGAGKMGTLAAQNLYGNGVGKVTVVNRTLEKAKQLAAQFDGEA---KSLGELSCALLEADIVISSTGAKGYMLTKE---EMAPLEKMRKGRPLFMVDIAVPRDLDPALAELETVFLYDIDDLQDVVAANLAERQKAAALIEEMIEGE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACWK (Glutamyl-tRNA reductase OS=Bacillus weihenstephanensis (strain KBAB4) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 66/208 (31.73%), Postives = 111/208 (53.37%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  +++ KR  +ET I            EL   K          +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     KPLSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVVTLAKRAHSETTIGESAMSVSYAAVELG--KKIFGDLTDCHVLILGAGKMGELALQNLYGSGARKVTVMNRTLTKAEVMAEKYMGHA---KPLSELQCALLEADILISSTGASEYVITKEM---MTKVERMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHESW (Glutamyl-tRNA reductase OS=Shewanella sp. (strain W3-18-1) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 71/199 (35.68%), Postives = 103/199 (51.76%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            I  LF++  SV K+VRTET I             +A  K   SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER   + EE     I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  N   R   A +A+ I  E+S
Sbjct:  134 IDRLFQNTFSVAKKVRTETEIGAAAVSVAFAAVSMA--KHIFSSLSTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQGMCEEFGATAITLAQIPDYLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNMASRKEAAEQAELITEEQS 325          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHEPC (Glutamyl-tRNA reductase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 71/199 (35.68%), Postives = 103/199 (51.76%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            I  LF++  SV K+VRTET I             +A  K   SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER   + EE     I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  N   R   A +A+ I  E+S
Sbjct:  134 IDRLFQNTFSVAKKVRTETEIGAAAVSVAFAAVSMA--KHIFSSLSTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQGMCEEFGATAITLAQIPDYLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNMASRKEAAEQAELITEEQS 325          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_KLEP7 (Glutamyl-tRNA reductase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 68/197 (34.52%), Postives = 110/197 (55.84%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S  T  +L++GAG+  +LV +HL      KMV+ NR+ ER  A+ EE+ G E+I   LS++     +AD++ +STAS  P+  K  V+    ++A      L +DI+VPR+V   V  +  A +Y+VDDL+ ++  N   R   A++A++I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIFESLSSVT--VLLVGAGETIELVARHLREHHVRKMVIANRTRERAQALAEEV-GAEVI--ALSDIDERLKEADIIISSTASPLPIIGKGMVERA--LKARRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQNIIQHNLAQRKAAAVQAESIVEQETS 330          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_GEOMG (Glutamyl-tRNA reductase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 68/191 (35.60%), Postives = 101/191 (52.88%), Query Frame = 1
Query:   52 AISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            A SV KRVRTET I            ELA       S  T  +++IGAG+M +L  KH +  G   ++V NR+ ER   + EE  G  + +  L + L     AD+V +ST +   +     V+++  +         FIDI+VPR++   V DVE   +Y++DDL+ VVA+N + R  +A +A+AII EE
Sbjct:  145 AFSVAKRVRTETKIASSAVSVSFAAVELARKIFGNLSDKT--VMLIGAGEMCELAAKHFINNGVRGVMVTNRTYERAVKLAEEFEGKPVSFDDLFDQLH---KADIVLSSTGATQFIIKPKDVEEV--IRRRKLKPMFFIDIAVPRDIDPKVNDVENVYLYDMDDLQGVVASNLQQRAEEAKKAEAIIDEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHELP (Glutamyl-tRNA reductase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 67/197 (34.01%), Postives = 106/197 (53.81%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            LF++  SV K+VRTET I             +A  K   S+ +  ++L+IGAG+  +LV +HL   G   M+V NR+  R  A+ EE     I  + + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++ + VAD++ A +Y VDDL+ ++  N   R   A +A+ I+ EES+
Sbjct:  137 LFQNTFSVAKKVRTETEIGAAAVSVAFAAVSMA--KHIFSALSATKVLLIGAGETIELVARHLKDNGVDSMIVANRTISRAEAMCEEFGATAITLEQIPDFLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEAEVADLDDAFLYTVDDLQSIIEQNMASRREAAEKAELIVEEESH 326          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHEB9 (Glutamyl-tRNA reductase OS=Shewanella baltica (strain OS195) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 70/199 (35.18%), Postives = 103/199 (51.76%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            I  LF++  SV K+VRT+T I             +A  K   SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER   + EE     I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  N   R   A +A+ I  E+S
Sbjct:  134 IDRLFQNTFSVAKKVRTDTEIGAAAVSVAFAAVSMA--KHIFSSISTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQGMCEEFGATAITLAQIPDYLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNMASRKEAAEQAEVITEEQS 325          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHEB8 (Glutamyl-tRNA reductase OS=Shewanella baltica (strain OS185) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 70/199 (35.18%), Postives = 103/199 (51.76%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            I  LF++  SV K+VRT+T I             +A  K   SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER   + EE     I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  N   R   A +A+ I  E+S
Sbjct:  134 IDRLFQNTFSVAKKVRTDTEIGAAAVSVAFAAVSMA--KHIFSSISTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQGMCEEFGATAITLAQIPDYLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNMASRKEAAEQAEVITEEQS 325          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_EDWI93.043e-2134.17Glutamyl-tRNA reductase OS=Edwardsiella ictaluri (... [more]
HEM1_GEOTN3.974e-2133.00Glutamyl-tRNA reductase OS=Geobacillus thermodenit... [more]
HEM1_BACWK3.974e-2131.73Glutamyl-tRNA reductase OS=Bacillus weihenstephane... [more]
HEM1_SHESW5.190e-2135.68Glutamyl-tRNA reductase OS=Shewanella sp. (strain ... [more]
HEM1_SHEPC5.190e-2135.68Glutamyl-tRNA reductase OS=Shewanella putrefaciens... [more]
HEM1_KLEP75.190e-2134.52Glutamyl-tRNA reductase OS=Klebsiella pneumoniae s... [more]
HEM1_GEOMG5.190e-2135.60Glutamyl-tRNA reductase OS=Geobacter metallireduce... [more]
HEM1_SHELP8.853e-2134.01Glutamyl-tRNA reductase OS=Shewanella loihica (str... [more]
HEM1_SHEB98.853e-2135.18Glutamyl-tRNA reductase OS=Shewanella baltica (str... [more]
HEM1_SHEB88.853e-2135.18Glutamyl-tRNA reductase OS=Shewanella baltica (str... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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