FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHEB5 (Glutamyl-tRNA reductase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 70/199 (35.18%), Postives = 103/199 (51.76%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            I  LF++  SV K+VRT+T I             +A  K   SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER   + EE     I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  N   R   A +A+ I  E+S
Sbjct:  134 IDRLFQNTFSVAKKVRTDTEIGAAAVSVAFAAVSMA--KHIFSSISTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQGMCEEFGATAITLAQIPDYLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNMASRKEAAEQAEVITEEQS 325          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHEB2 (Glutamyl-tRNA reductase OS=Shewanella baltica (strain OS223) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 70/199 (35.18%), Postives = 103/199 (51.76%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            I  LF++  SV K+VRT+T I             +A  K   SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER   + EE     I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  N   R   A +A+ I  E+S
Sbjct:  134 IDRLFQNTFSVAKKVRTDTEIGAAAVSVAFAAVSMA--KHIFSSISTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQGMCEEFGATAITLAQIPDYLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNMASRKEAAEQAEVITEEQS 325          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHEAM (Glutamyl-tRNA reductase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 69/196 (35.20%), Postives = 105/196 (53.57%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            LF+   SV K+VRTET I             +A  K   SS A+ ++L+IGAG+  +LV +HL   G + MVV NR+ ER  A+ EE     I    LS++      AD+V +STAS  P+  K  V+    ++       L +DI+VPR++ + V +++ A +Y VDDL+ ++  N   R   A +A+ I  E+S
Sbjct:  137 LFQSTFSVAKKVRTETEIGTAAVSVAFAAVSMA--KHIFSSLASTKVLLIGAGETIELVARHLKENGVSSMVVANRTVERAQAMCEEFGATAI---TLSQIPDFLPKADIVISSTASPLPILGKGMVE--KALKQRRHQPMLLVDIAVPRDIEAEVGELDDAFLYTVDDLQSIIEQNMASRKEAAEQAEVIAQEQS 325          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SERP5 (Glutamyl-tRNA reductase OS=Serratia proteamaculans (strain 568) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 70/206 (33.98%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   22 GRNISG----LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            G+++SG    LF+ + SV KRVRTET I             LA       S A   +L++GAG+  +LV +HL       M++ NR+ ER   + +E+ G E+I  P  E+    ADAD++ +STAS  P+  K  V+    ++A      L +DI+VPR++   V  +  A +Y+VDDL  ++ +N   R   A++A++I+ +ES
Sbjct:  131 GQSLSGELERLFQKSFSVAKRVRTETEIGASAVSVAFAACTLARQIF--ESLAELNVLLVGAGETIELVARHLREHKVRHMIIANRTRERAQLLADEV-GAEVITLP--EIDERLADADIIISSTASPLPIIGKGMVERA--LKARRNQPMLLVDIAVPRDIEPEVGKLANAYLYSVDDLHAIIQSNLAQRKAAAVQAESIVQQES 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PSEA6 (Glutamyl-tRNA reductase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 72/211 (34.12%), Postives = 113/211 (53.55%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHWR 660
            LF+   SV KRVR+ET I            +LA  K   SS   + +L+IGAG+  +LV KH+  +G  K+ V NR+  R  AI + L    +    L+++ +   DAD+V +STAS+ P+  K  V      E A+   R      +D++VPR++ + V +++ A +Y VDDL+++V  N E R   A++AQ +I E++    L    WR
Sbjct:  139 LFQQTFSVAKRVRSETEIGSNAVSVAYASVQLA--KHIFSSLKKSNVLLIGAGETIELVAKHMHEQGVKKLSVANRTLARAEAIAQPLGATTLT---LTQIPAHLKDADIVISSTASQLPILGKGLV------ERALKDRRHKPMFLVDLAVPRDIEAEVGELDDAYLYTVDDLQQIVEKNIESRQHAALQAQQMIEEQAQQYML----WR 334          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_GEOLS (Glutamyl-tRNA reductase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 69/195 (35.38%), Postives = 103/195 (52.82%), Query Frame = 1
Query:   52 AISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL----FIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            A SV KRVRTET I            ELA       +  T  +L+IGAG+M +L  +H +  G   ++V NR+ ER   + EE  G  I   P  E+      AD+V TST +   +         P +E  +   R+     IDI+VPR++   V +++   +Y++DDL++VVAAN E R ++A +A+AII+EE
Sbjct:  145 AFSVAKRVRTETRIASSAVSVSFAAVELARKIFGNLTDKT--VLLIGAGEMCELAARHFLTNGAKGVMVTNRTFERAQRLAEEFGGEAI---PFDELFLHLHKADIVLTSTGAPHAIITP------PDLEEVIKRRRMRPMFLIDIAVPRDIDPAVNEMDAVYLYDMDDLQQVVAANLEGRKQEADKAEAIIAEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM12_ACIBL (Glutamyl-tRNA reductase 2 OS=Acidobacteria bacterium (strain Ellin345) GN=hemA2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 64/198 (32.32%), Postives = 105/198 (53.03%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            +  L   A +V KRVRT+T+I            ELA  K    S     + ++GAGKM +L  +H VA G  K+ V NR+ ER  A  ++ NG  +   P+  +      AD+V +ST +   +F K+H +    +         F+DI+VPR+V + + +++   VY++DDL++VV ++  DR  +A  A+AI++ E
Sbjct:  135 LDALLTRAFAVAKRVRTDTSIASSSVSIASVAVELA--KKIFGSLQGRSVYIVGAGKMCELAARHFVAHGVEKIYVANRTYERGVAFAKKFNGEAV---PIEHLYETVDKADIVLSSTGAPIAIFRKEHGEKF--LSRRKNRPMFFLDIAVPRDVDAKMNELDGIFVYDIDDLQQVVHSHISDRKDEAAHAEAIVNAE 325          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNAS (Glutamyl-tRNA reductase OS=Syntrophus aciditrophicus (strain SB) GN=hemA PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 61/198 (30.81%), Postives = 100/198 (50.51%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            ++ +  HA  V KRVRTET I            ELA             +L++GAG+M +L  +HL+ +G   + V NR+  R   + E+  G  ++ + + E+L      D+V +ST +   +  +D V     +          IDI+VPR++     D++   +YN+D L+E+V  N+  RLR+A +A+AII EE
Sbjct:  140 LNRILHHAFQVAKRVRTETGIADNAVSVGYAAVELAKKIFGRLDGKV--ILLVGAGEMSELAARHLLKQGIKSIFVANRTHARALEMAEQFEGKAVVLEQVPEVLK---SVDIVISSTGASNYVLTRDMVA--AALRRRKNRFLFLIDIAVPRDIEPAAGDIDNVYLYNIDHLQELVDENRNHRLREAEKAEAIIEEE 330          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHISS (Glutamyl-tRNA reductase OS=Shigella sonnei (strain Ss046) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/197 (33.50%), Postives = 111/197 (56.35%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER   + +E+ G E+I   LSE+     +AD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+++E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEV-GAEVI--ALSEIDERLREADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETS 330          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHIFL (Glutamyl-tRNA reductase OS=Shigella flexneri GN=hemA PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/197 (33.50%), Postives = 111/197 (56.35%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER   + +E+ G E+I   LSE+     +AD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+++E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEV-GAEVI--ALSEIDERLREADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETS 330          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_SHEB58.853e-2135.18Glutamyl-tRNA reductase OS=Shewanella baltica (str... [more]
HEM1_SHEB28.853e-2135.18Glutamyl-tRNA reductase OS=Shewanella baltica (str... [more]
HEM1_SHEAM8.853e-2135.20Glutamyl-tRNA reductase OS=Shewanella amazonensis ... [more]
HEM1_SERP58.853e-2133.98Glutamyl-tRNA reductase OS=Serratia proteamaculans... [more]
HEM1_PSEA68.853e-2134.12Glutamyl-tRNA reductase OS=Pseudoalteromonas atlan... [more]
HEM1_GEOLS8.853e-2135.38Glutamyl-tRNA reductase OS=Geobacter lovleyi (stra... [more]
HEM12_ACIBL8.853e-2132.32Glutamyl-tRNA reductase 2 OS=Acidobacteria bacteri... [more]
HEM1_SYNAS1.156e-2030.81Glutamyl-tRNA reductase OS=Syntrophus aciditrophic... [more]
HEM1_SHISS1.156e-2033.50Glutamyl-tRNA reductase OS=Shigella sonnei (strain... [more]
HEM1_SHIFL1.156e-2033.50Glutamyl-tRNA reductase OS=Shigella flexneri GN=he... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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