FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACHD (Glutamyl-tRNA reductase OS=Bacillus halodurans GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 60/201 (29.85%), Postives = 106/201 (52.74%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            G   + LFK AI++ KR  +ET+I            EL   K         ++L++GAGKMG+L  KHL + G  ++ V+NR+ E+ A + +   GV+   +P +E+     +AD++ +ST +   +   D V     ++   G     +DI+VPR++   +A  +   +Y++DDL+ +V  N E+R  +A + + +I EE
Sbjct:  135 GSIFNHLFKQAITLAKRAHSETDIGQNAVSVSYAAVELG--KKIFDDFKGKQVLILGAGKMGELTAKHLHSNGAEQVTVINRTREKAAELAKRFLGVD---RPYNELTEAIVEADILISSTGATGYVVTSDMVSH--ALKKRKGRPLFMVDIAVPRDLDPALASHDDVYLYDIDDLQNIVQTNLEERRTEAEKIELLIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACCR (Glutamyl-tRNA reductase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/208 (31.73%), Postives = 111/208 (53.37%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  I++ KR  +ET I            EL      E +     +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     K LSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTDC--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEVMAEKYMGHA---KSLSELQCALLEADILISSTGASEYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACC4 (Glutamyl-tRNA reductase OS=Bacillus cereus (strain B4264) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/208 (31.73%), Postives = 111/208 (53.37%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  I++ KR  +ET I            EL      E +     +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     K LSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTDC--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEVMAEKYMGHA---KSLSELQCALLEADILISSTGASEYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACC2 (Glutamyl-tRNA reductase OS=Bacillus cereus (strain G9842) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 66/208 (31.73%), Postives = 111/208 (53.37%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  I++ KR  +ET I            EL      E +     +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     K LSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTDC--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEVMAEKYMGHA---KSLSELQCALLEADILISSTGASEYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_YERPS (Glutamyl-tRNA reductase OS=Yersinia pseudotuberculosis GN=hemA PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 67/196 (34.18%), Postives = 106/196 (54.08%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            LF+ + SV KRVRTET I             LA       S     +L++GAG+  +LV +HL       M++ NR+ ER  ++  E+ G E+I  P  E+ +  ADAD++ +STAS  P+  K  V+    ++       LFIDI+VPR++   V  +  A +Y+VDDL+ ++  N   R   A++A++I+ +ES
Sbjct:  141 LFQKSFSVAKRVRTETEIGASAVSVAFAACSLARQIFESLSEL--HVLLVGAGETIELVARHLREHQVKHMIIANRTRERAQSLASEV-GAEVITLP--EIDARLADADIIISSTASPLPIIGKGMVERA--LKTRRNQPMLFIDIAVPRDIEPEVGKLSNAYLYSVDDLQAIIQHNMAQRQAAAVQAESIVQQES 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_YERPP (Glutamyl-tRNA reductase OS=Yersinia pestis (strain Pestoides F) GN=hemA PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 67/196 (34.18%), Postives = 106/196 (54.08%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            LF+ + SV KRVRTET I             LA       S     +L++GAG+  +LV +HL       M++ NR+ ER  ++  E+ G E+I  P  E+ +  ADAD++ +STAS  P+  K  V+    ++       LFIDI+VPR++   V  +  A +Y+VDDL+ ++  N   R   A++A++I+ +ES
Sbjct:  141 LFQKSFSVAKRVRTETEIGASAVSVAFAACSLARQIFESLSEL--HVLLVGAGETIELVARHLREHQVKHMIIANRTRERAQSLASEV-GAEVITLP--EIDARLADADIIISSTASPLPIIGKGMVERA--LKTRRNQPMLFIDIAVPRDIEPEVGKLSNAYLYSVDDLQAIIQHNMAQRQAAAVQAESIVQQES 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_YERPN (Glutamyl-tRNA reductase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=hemA PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 67/196 (34.18%), Postives = 106/196 (54.08%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            LF+ + SV KRVRTET I             LA       S     +L++GAG+  +LV +HL       M++ NR+ ER  ++  E+ G E+I  P  E+ +  ADAD++ +STAS  P+  K  V+    ++       LFIDI+VPR++   V  +  A +Y+VDDL+ ++  N   R   A++A++I+ +ES
Sbjct:  141 LFQKSFSVAKRVRTETEIGASAVSVAFAACSLARQIFESLSEL--HVLLVGAGETIELVARHLREHQVKHMIIANRTRERAQSLASEV-GAEVITLP--EIDARLADADIIISSTASPLPIIGKGMVERA--LKTRRNQPMLFIDIAVPRDIEPEVGKLSNAYLYSVDDLQAIIQHNMAQRQAAAVQAESIVQQES 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_YERPG (Glutamyl-tRNA reductase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=hemA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 67/196 (34.18%), Postives = 106/196 (54.08%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            LF+ + SV KRVRTET I             LA       S     +L++GAG+  +LV +HL       M++ NR+ ER  ++  E+ G E+I  P  E+ +  ADAD++ +STAS  P+  K  V+    ++       LFIDI+VPR++   V  +  A +Y+VDDL+ ++  N   R   A++A++I+ +ES
Sbjct:  141 LFQKSFSVAKRVRTETEIGASAVSVAFAACSLARQIFESLSEL--HVLLVGAGETIELVARHLREHQVKHMIIANRTRERAQSLASEV-GAEVITLP--EIDARLADADIIISSTASPLPIIGKGMVERA--LKTRRNQPMLFIDIAVPRDIEPEVGKLSNAYLYSVDDLQAIIQHNMAQRQAAAVQAESIVQQES 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_YERPE (Glutamyl-tRNA reductase OS=Yersinia pestis GN=hemA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 67/196 (34.18%), Postives = 106/196 (54.08%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            LF+ + SV KRVRTET I             LA       S     +L++GAG+  +LV +HL       M++ NR+ ER  ++  E+ G E+I  P  E+ +  ADAD++ +STAS  P+  K  V+    ++       LFIDI+VPR++   V  +  A +Y+VDDL+ ++  N   R   A++A++I+ +ES
Sbjct:  141 LFQKSFSVAKRVRTETEIGASAVSVAFAACSLARQIFESLSEL--HVLLVGAGETIELVARHLREHQVKHMIIANRTRERAQSLASEV-GAEVITLP--EIDARLADADIIISSTASPLPIIGKGMVERA--LKTRRNQPMLFIDIAVPRDIEPEVGKLSNAYLYSVDDLQAIIQHNMAQRQAAAVQAESIVQQES 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_YERPA (Glutamyl-tRNA reductase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=hemA PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 67/196 (34.18%), Postives = 106/196 (54.08%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            LF+ + SV KRVRTET I             LA       S     +L++GAG+  +LV +HL       M++ NR+ ER  ++  E+ G E+I  P  E+ +  ADAD++ +STAS  P+  K  V+    ++       LFIDI+VPR++   V  +  A +Y+VDDL+ ++  N   R   A++A++I+ +ES
Sbjct:  141 LFQKSFSVAKRVRTETEIGASAVSVAFAACSLARQIFESLSEL--HVLLVGAGETIELVARHLREHQVKHMIIANRTRERAQSLASEV-GAEVITLP--EIDARLADADIIISSTASPLPIIGKGMVERA--LKTRRNQPMLFIDIAVPRDIEPEVGKLSNAYLYSVDDLQAIIQHNMAQRQAAAVQAESIVQQES 329          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_BACHD1.156e-2029.85Glutamyl-tRNA reductase OS=Bacillus halodurans GN=... [more]
HEM1_BACCR1.156e-2031.73Glutamyl-tRNA reductase OS=Bacillus cereus (strain... [more]
HEM1_BACC41.156e-2031.73Glutamyl-tRNA reductase OS=Bacillus cereus (strain... [more]
HEM1_BACC21.156e-2031.73Glutamyl-tRNA reductase OS=Bacillus cereus (strain... [more]
HEM1_YERPS1.510e-2034.18Glutamyl-tRNA reductase OS=Yersinia pseudotubercul... [more]
HEM1_YERPP1.510e-2034.18Glutamyl-tRNA reductase OS=Yersinia pestis (strain... [more]
HEM1_YERPN1.510e-2034.18Glutamyl-tRNA reductase OS=Yersinia pestis bv. Ant... [more]
HEM1_YERPG1.510e-2034.18Glutamyl-tRNA reductase OS=Yersinia pestis bv. Ant... [more]
HEM1_YERPE1.510e-2034.18Glutamyl-tRNA reductase OS=Yersinia pestis GN=hemA... [more]
HEM1_YERPA1.510e-2034.18Glutamyl-tRNA reductase OS=Yersinia pestis bv. Ant... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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