FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNE7 (Glutamyl-tRNA reductase OS=Synechococcus elongatus (strain PCC 7942) GN=hemA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.243e-31
Identity = 79/215 (36.74%), Postives = 130/215 (60.47%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKL------PESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNG-VEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ   G GR ++ L K A++ GKRVRTET+I            ELA +K+       + + A  R+L++GAGKM +L+++HL+AKG   + ++NR+  R   + ++  G ++I    LS +++   +AD+VFTST++  P+  +  ++ +   E  +    + IDI+VPRNV + V ++ +   YNVDDL+EVVA N+E R + A EA+A++ EE
Sbjct:  128 GQQYEGVGRILNRLLKQAVTAGKRVRTETSIGTGAVSISSAAVELAQLKVIARDDRSDGNLAGQRVLILGAGKMSRLLVQHLIAKGADTIQILNRTLGRAEELAKQYGGDLQIQVGLLSGLMNAIVEADIVFTSTSATDPILDRAKLEMVLAPEQRL----MLIDIAVPRNVAADVVELTSVESYNVDDLREVVAQNQESRRKLAEEAEALLEEE 338          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_THEEB (Glutamyl-tRNA reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=hemA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.798e-31
Identity = 81/209 (38.76%), Postives = 123/209 (58.85%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL-FIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ     G  ++ +F  AI+ GKRVRTET+I            ELA ++L    +   R+ V+GAGKM +LV++HL+A+G  ++ ++NRS ER   + ++   V      ++++L   A  D+VFTSTA+  PL  +D++         VG   L  IDISVPRNV + V ++ T +++NVDDL+ VVA N+E R + A EA+ I+ EE
Sbjct:  128 GQQYKSIGPILNRVFTGAIAAGKRVRTETSIGTGAVSISSAAVELADLRLQNLQNC--RIAVVGAGKMSRLVVQHLIARGVKEIRIINRSLERAQELAQQFPEVRFELFTMTDLLPIVAAMDLVFTSTAATEPLLDRDNLG-----AVLVGDRSLAIIDISVPRNVHANVTELGTVQLFNVDDLQAVVAQNQEARRQLAQEAEGILEEE 329          

HSP 2 Score: 23.8682 bits (50), Expect = 7.798e-31
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  624 IKQFAAWRDSLETVPTIKN 680
            ++ F AW  +LETVP I++
Sbjct:  330 LETFLAWWHALETVPIIRS 348          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_ANAVT (Glutamyl-tRNA reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=hemA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30
Identity = 86/220 (39.09%), Postives = 128/220 (58.18%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHWR 660
            GQ   G    ++ LFK A++ GKRVRTET+I            ELA +K    + A  R+ ++GAGKM +L+++HLV+KG T++ +VNRS ER   + ++ +   I    L EM++  A++ +VFTST++  P+  +     L  V A    L LF DISVPRNV + V ++   + +NVDDLK VVA N E R + A EA+ ++ EE   ++   I WR
Sbjct:  128 GQQYNGIKTILNRLFKQALTAGKRVRTETSIGTGAVSISSAAVELAQIKA--ENLAACRVTILGAGKMSRLLVQHLVSKGATQISIVNRSRERAQELAKQFSEHPIRTHLLPEMMTVIAESHLVFTSTSATEPILDR---AKLEMVLAPNQPLMLF-DISVPRNVHTDVNELANVQAFNVDDLKAVVAQNYESRRKMAQEAERLLEEE---IEAFDIWWR 338          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_ANASP (Glutamyl-tRNA reductase OS=Anabaena sp. (strain PCC 7120) GN=hemA PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 86/220 (39.09%), Postives = 128/220 (58.18%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHWR 660
            GQ   G    ++ LFK A++ GKRVRTET+I            ELA +K    + A  R+ ++GAGKM +L+++HLV+KG T++ +VNRS ER   + ++ +   I    L EM++  A++ +VFTST++  P+  +     L  V A    L LF DISVPRNV + V ++   + +NVDDLK VVA N E R + A EA+ ++ EE   ++   I WR
Sbjct:  128 GQQYNGIKTILNRLFKQALTAGKRVRTETSIGTGAVSISSAAVELAQIKA--ENLAACRVTILGAGKMSRLLVQHLVSKGATQISIVNRSRERAQELAKQFSEHPIRTHLLPEMMTVIAESHLVFTSTSATEPILDR---AKLEMVLAPNQPLMLF-DISVPRNVHTDVNELVNVQAFNVDDLKAVVAQNYESRRKMAQEAERLLEEE---IEAFDIWWR 338          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNJA (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain JA-3-3Ab) GN=hemA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.242e-30
Identity = 75/208 (36.06%), Postives = 118/208 (56.73%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ   G  R ++ LFK AI+ GKR+RTET I            ELAL +  + S +  ++ V+GAGKM +L+++HL+AKG   + VVNRS ER  A+ ++     I   P   +LS  A++++VFTST +  P+   + +  +   +  +    L +DISVPRN+   V  +   +V+NVD L  +V  N+  R + A+ A+A++ EE
Sbjct:  128 GQACNGMDRILNRLFKAAITAGKRIRTETGIGTGAMSISSAAVELALQE--QGSLSQGKVTVVGAGKMARLLVQHLLAKGAVDITVVNRSLERAEALAKQFE-QPIQVLPWESLLSSIAESNLVFTSTGATQPILTYEQLAGVLQPDQPL----LLVDISVPRNIDPGVEKLRGVQVFNVDHLSRIVEENRAQRQKLALAAEALVEEE 328          

HSP 2 Score: 26.9498 bits (58), Expect = 2.242e-30
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  624 IKQFAAWRDSLETVPTIKN 680
            ++QF  W  SLETVPTI +
Sbjct:  329 VEQFMEWWRSLETVPTISS 347          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CYAPA (Glutamyl-tRNA reductase OS=Cyanophora paradoxa GN=hemA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 74/214 (34.58%), Postives = 122/214 (57.01%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQL 642
            GQ   G G  ++ +FK AIS GKRVRTET I            ELA +K  +    TA + ++GAGKM +L+++HL++K    + +VNRS ER   + ++     I    LSE+ +   ++D+VFT T+S+ P+   + + D   + + +    +  DI+VPRNV   V+  +  +V+NVDDLK VV+ N++ R + A  A+ ++ EE ++  +
Sbjct:  128 GQQYQGIGPVLNNIFKQAISAGKRVRTETQISTGAVSISSAAVELAQIK--KQDLRTANITILGAGKMSRLLVQHLLSKRVKDINIVNRSVERAKLLVDQFKEANINIYNLSELKTILQNSDIVFTGTSSQEPIITPELINDCDNLPSEL----MLFDIAVPRNVDPNVSQFDNIKVFNVDDLKVVVSQNQQTRRKMAKAAEILLEEELSAFNI 335          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNJB (Glutamyl-tRNA reductase OS=Synechococcus sp. GN=hemA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.852e-29
Identity = 78/208 (37.50%), Postives = 119/208 (57.21%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ   G  R ++ LFK AI+ GKRVRTET I            ELAL +  + S +  ++ V+GAG+M +L+++HL+AKG   + VVNRS ER  A+ ++     I   P   +L+  A++++VFTST +  P+    + Q L  V      L L +DISVPRN+   V  ++  +V+NVD L  +V  N+  R + A+ A+A++ EE
Sbjct:  128 GQACNGMDRILNRLFKAAITAGKRVRTETEIGTGAMSISSAAVELALQE--QGSLSQGKVTVVGAGRMARLLVQHLLAKGAVDITVVNRSLERAEALAKQFEQ-PIQVLPWESLLNSVAESNLVFTSTGATQPIL---NYQQLAGVLQPDQPL-LLVDISVPRNIDPDVEKLKGVQVFNVDHLSRIVEENRAQRQKLALAAEALVEEE 328          

HSP 2 Score: 26.1794 bits (56), Expect = 1.852e-29
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  624 IKQFAAWRDSLETVPTIKN 680
            + QF  W  SLETVPTI +
Sbjct:  329 VDQFMEWWRSLETVPTISS 347          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROM9 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9312) GN=hemA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 78/216 (36.11%), Postives = 127/216 (58.80%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL-FIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ     G  ++ L   ++S GK+VR+ETN+            ELA +K+ +        S  + ++LV+GAG+M +L+I HL AKGC K+++VNR+ +R   +  +   +EI+ K L+E+    + + +VFTSTASE P+       DL  +E      +L FIDI VPRN+ + V + +  + ++VDDL+EVV+ N+E R + A EA++++ EE
Sbjct:  128 GQENQSTGPILNRLLTQSVSTGKKVRSETNLGTGAVSISSAAVELAQLKIGQEKGFDTLVSLESEKVLVVGAGRMSRLLITHLKAKGCHKLILVNRNIDRALNLAIDFPDIEIVCKGLNELDENISISSLVFTSTASEEPII------DLAKIEKLNLNNKLKFIDIGVPRNISNDVKNHQFVKSFDVDDLQEVVSRNQEFRQKIAKEAESLVEEE 337          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROM0 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9301) GN=hemA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 78/216 (36.11%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL-FIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ     G  ++ L   ++S GK+VR+ETN+            ELA +K+ +        S  +  +LV+GAG+M +L+I HL +KGC K++++NR+ +R   + ++   +EI+ K L+E+    + + +VFTSTASE P+       DL  +E      RL FIDI VPRN+ + V   E  + ++VDDL+EVV+ N+E R + A EA++++ EE
Sbjct:  128 GQENQSTGPILNRLLTQSVSTGKKVRSETNLGTGAVSISSAAVELAQLKIGQEKGFDNLVSLESENVLVVGAGRMSRLLITHLKSKGCHKLILLNRNIDRALNLAQDFPDLEIVCKGLNELEENISLSSLVFTSTASEEPII------DLTKIEKINLSNRLKFIDIGVPRNISNDVKQHEFVKSFDVDDLQEVVSRNQEFRQKIAKEAESLVEEE 337          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROMS (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain AS9601) GN=hemA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28
Identity = 76/216 (35.19%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL-FIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ     G  ++ L   ++S GK+VR+ETN+            ELA +K+ +        S  +  +LV+GAG+M +L+I HL +KGC K++++NR+ +R   + ++   +EI+ + L+E+    + + +VFTSTASE P+       DL  +E      RL FIDI VPRN+ + V   +  + ++VDDL+EVV+ N+E R + A EA++++ EE
Sbjct:  128 GQENQSTGPILNRLLTQSVSTGKKVRSETNLGTGAVSISSAAVELAQLKIGQEKGFDTLVSLESENVLVVGAGRMSRLLITHLKSKGCHKLILLNRNIDRALNLAQDFPDLEIVCRGLNELEENISLSSIVFTSTASEEPII------DLAKIEKLNLSNRLKFIDIGVPRNISNDVKQHQFVKSFDVDDLQEVVSRNQEFRQKIAKEAESLVEEE 337          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_SYNE73.243e-3136.74Glutamyl-tRNA reductase OS=Synechococcus elongatus... [more]
HEM1_THEEB7.798e-3138.76Glutamyl-tRNA reductase OS=Thermosynechococcus elo... [more]
HEM1_ANAVT1.233e-3039.09Glutamyl-tRNA reductase OS=Anabaena variabilis (st... [more]
HEM1_ANASP1.610e-3039.09Glutamyl-tRNA reductase OS=Anabaena sp. (strain PC... [more]
HEM1_SYNJA2.242e-3036.06Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_CYAPA7.989e-3034.58Glutamyl-tRNA reductase OS=Cyanophora paradoxa GN=... [more]
HEM1_SYNJB1.852e-2937.50Glutamyl-tRNA reductase OS=Synechococcus sp. GN=he... [more]
HEM1_PROM96.763e-2936.11Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_PROM06.763e-2936.11Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_PROMS1.968e-2835.19Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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