FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROM2 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9215) GN=hemA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.356e-28
Identity = 76/216 (35.19%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL-FIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ     G  ++ L   ++S GK+VR+ETN+            ELA +K+ +        S  +  +LV+GAG+M +L+I HL +KGC K+++VNR+ +R   + ++   ++I+ + L+E+    + + +VFTSTASE P+       DL  +E      +L FIDI VPRN+ + V   E  + ++VDDL+EVV+ N+E R + A EA++++ EE
Sbjct:  128 GQENQSTGPILNRLLTQSVSTGKKVRSETNLGTGAVSISSAAVELAQLKIGQEKGFDTLVSLESENVLVVGAGRMSRLLITHLKSKGCHKLILVNRNIDRALNLAQDFPDLKIVCRGLNELDENISISSLVFTSTASEVPII------DLAKIEKLNLNNKLKFIDIGVPRNISNDVKQHEFVKSFDVDDLQEVVSRNQEFRQKIAKEAESLVEEE 337          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROMM (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9313) GN=hemA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.373e-28
Identity = 75/216 (34.72%), Postives = 120/216 (55.56%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARML-------VIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            GQ     G  ++ L   A+S GKRVR+ETN+            ELA +KL ++      M        V+GAG+M +L+++HL AKGC+ ++++NR+ +R   +  +   + +  +PL ++  C +   +VFTSTA++ P+     ++ L         LRL IDI VPRN+ S V DV     ++VDDL EVV+ N+E R + A EA+ ++ EE+
Sbjct:  128 GQEHKSMGPILNRLLTQAVSTGKRVRSETNLGTGAVSISSAAVELAQLKLGQAQGEDQLMTLESELVAVVGAGRMSRLLLQHLQAKGCSGVMLLNRTRQRAEDLSADFPELPVECRPLDDLNHCLSTCSLVFTSTAADDPIVDASLLKQL----KRRSFLRL-IDIGVPRNIASDVVDVPGVESHDVDDLHEVVSRNQEARQQMAKEAEVVLQEET 338          

HSP 2 Score: 24.2534 bits (51), Expect = 3.373e-28
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 3
Query:  633 FAAWRDSLETVPTI 674
            F  W DSLE VPTI
Sbjct:  341 FLEWWDSLEAVPTI 354          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNPX (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain WH8102) GN=hemA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.717e-28
Identity = 74/216 (34.26%), Postives = 123/216 (56.94%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            GQ     G  ++ L   A+S GKRVR+ETN+            ELA +KL +S       +  + ++ V+GAG+M +L+++HL AKG + +V++NR+ +R   +  +   + +  +PL+++  C +   +VFTSTA++ P+        L P+      LRL IDI VPRN+ +  A V+    ++VDDL+EVVA N+E R   A EA+ ++ +E+
Sbjct:  128 GQEHKSLGPILNRLLTQAVSTGKRVRSETNLGTGAVSISSAAVELAQLKLGQSRGLDQLVTLESEQIAVVGAGRMSRLLLQHLQAKGASGVVLLNRTVQRAELLAADFPDLPVQCRPLTDLDQCLSTCSLVFTSTAADDPII---DAARLEPLNRR-SKLRL-IDIGVPRNIAADAAAVDGVESHDVDDLQEVVARNQEARQAMAREAEQLLQQEA 338          

HSP 2 Score: 26.5646 bits (57), Expect = 5.717e-28
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  627 KQFAAWRDSLETVPTI 674
            +QF  W DSLE VPTI
Sbjct:  339 QQFLEWWDSLEAVPTI 354          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROM3 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9303) GN=hemA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.441e-28
Identity = 74/216 (34.26%), Postives = 120/216 (55.56%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARML-------VIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            GQ     G  ++ L   A+S GKRVR+ETN+            ELA +KL ++      M        V+GAG+M +L+++HL AKGC+ ++++NR+ +R   +  +   + +  +PL ++  C +   +VFTSTA++ P+     ++ L         LRL IDI VPRN+ S V D+     ++VDDL EVV+ N+E R + A EA+ ++ EE+
Sbjct:  128 GQEHKSMGPILNRLLTQAVSTGKRVRSETNLGTGAVSISSAAVELAQLKLGQAQGEDQLMTLESELVAVVGAGRMSRLLLQHLQAKGCSGVMLLNRTRQRAEDLSADFPELPVECRPLDDLNHCLSTCSLVFTSTAADDPIVDASLLKQL----KRRSFLRL-IDIGVPRNIASDVVDLPGVESHDVDDLHEVVSRNQEARQQMAKEAEVVLQEET 338          

HSP 2 Score: 24.2534 bits (51), Expect = 7.441e-28
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 3
Query:  633 FAAWRDSLETVPTI 674
            F  W DSLE VPTI
Sbjct:  341 FLEWWDSLEAVPTI 354          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNPW (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain WH7803) GN=hemA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.686e-28
Identity = 74/216 (34.26%), Postives = 119/216 (55.09%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            GQ     G  ++ L   A+S GKRVR+ETN+            ELA +KL +S       +    ++ V+GAG+M +L+++HL AKG + +VV+NR+  R  A+  +   + +  +PL ++  C +   ++FTSTA++ P+   + +  L         LRL IDI VPRN+ + V  +     ++VDDLKEVV  N+E R + A EAQ ++  E+
Sbjct:  128 GQEHKSLGPILNRLLTQAVSTGKRVRSETNLGTGAVSISSAAVELAQLKLGQSRGLDELVTLEDEQVAVVGAGRMSRLLLQHLQAKGASGVVVLNRTVARAEALAADFPTLPVQCRPLKDLDHCLSTCSLIFTSTAADDPIIDAERLSKL----NRRSSLRL-IDIGVPRNIAADVEGIGGVDAHDVDDLKEVVERNQEARQQVAREAQGLLDGEA 338          

HSP 2 Score: 26.9498 bits (58), Expect = 9.686e-28
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  627 KQFAAWRDSLETVPTI 674
            +QF  W DSLE VPTI
Sbjct:  339 RQFLEWWDSLEAVPTI 354          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROM5 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9515) GN=hemA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 72/215 (33.49%), Postives = 120/215 (55.81%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATA-------RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ     G  ++ L   ++S GK+VR ETN+            ELA +K+ + +           ++LV+GAG+M +L+I HL +KGC K+ ++NR+ +R   +  +   +EII K L E+      + +VFTSTASE P    + ++++     ++     FIDI VPRN+ + V   +    ++VDDL+EVV+ N+E R + A EA++++ EE
Sbjct:  128 GQENQSTGPILNRLLSQSVSAGKKVRAETNLGTGAVSISSAAVELAQLKIGQDNGIDGLVSLKGEKVLVVGAGRMSRLLITHLKSKGCNKLTLLNRNIDRAINLSGDFPDIEIICKGLDELDKSITLSSLVFTSTASEKPFIDLERIKNI-----SLNNKLKFIDIGVPRNISNDVKQHDLIEAFDVDDLEEVVSRNQEFRQKIAKEAESLVKEE 337          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNS3 (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain CC9311) GN=hemA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.261e-27
Identity = 77/215 (35.81%), Postives = 121/215 (56.28%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ     G  ++ L   A+S GKRVR+ETN+            ELA +KL +S       +  T ++ V+GAG+M +L+++HL AKG + +V++NR+ ER +A+  +   + I  + L ++  C +   +VFTSTA + P+   + +  L         LRL IDI VPRN+ S V +V     ++VDDL+EVV  N+E R + A EA+ ++ EE
Sbjct:  128 GQEHKSIGPILNRLLTQAVSTGKRVRSETNLSTGAVSVSSAAVELAQLKLGQSRGQDALVTLETEQIAVVGAGRMSRLLLQHLQAKGASGVVLLNRTIERASALATDFPNLPIQCRGLDDLDQCLSTCSLVFTSTAVDDPIIDANRLNAL----NRRSSLRL-IDIGVPRNIASDVHEVSGVESHDVDDLQEVVERNQEARQQVAREAEGLLLEE 337          

HSP 2 Score: 24.2534 bits (51), Expect = 1.261e-27
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 3
Query:  633 FAAWRDSLETVPTI 674
            F  W DSLE VPTI
Sbjct:  341 FLEWWDSLEAVPTI 354          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROM4 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9211) GN=hemA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.137e-27
Identity = 79/219 (36.07%), Postives = 127/219 (57.99%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLF----LKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ     G  ++ L   A+S GKRVR+ETN+            ELA +KL +S       S    ++ ++GAG+M +L+I+HL +KGC+K+ ++NR+ +R  A+  +   V+I  + L ++     ++ ++FTSTA+E P+     LK+ V+D          LRL IDI VPRN+ S V  +     ++VDDL+EVV+ N+E R + A+EA+A++ EE
Sbjct:  128 GQENHSMGPILNRLLTQAVSTGKRVRSETNLGTGAVSISSAAVELAQLKLGQSEGKDELMSLEREKVSIVGAGRMSRLLIQHLQSKGCSKLKLINRTFQRAEALALDFPDVDIHCQLLDDLDESLRNSTLIFTSTAAENPIIDAARLKEVVRD--------ETLRL-IDIGVPRNISSDVKGLTGFEAHDVDDLQEVVSRNQEARQQIALEAEALVDEE 337          

HSP 2 Score: 21.1718 bits (43), Expect = 2.137e-27
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 3
Query:  633 FAAWRDSLETVPTI 674
            F  W  SLE VPTI
Sbjct:  341 FLEWWASLEAVPTI 354          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VIBSL (Glutamyl-tRNA reductase OS=Vibrio splendidus (strain LGP32) GN=hemA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 82/196 (41.84%), Postives = 115/196 (58.67%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            LF+ + SV KRVRTET I             LA  K    S A + +L++GAG+  +LV KHL A GCTKM+V NR+ ER   + EE  G E+I   L+E+      AD+V +STAS  P+  K  V+    ++       L +DI+VPR+V S V D+  A +Y+VDDL+ +V  N E R  +A++A+AI+SEES
Sbjct:  139 LFQKSFSVAKRVRTETEIGGSAVSVAYAACTLA--KHIFESIAESTVLLVGAGETIELVAKHLSANGCTKMIVANRTRERALGLAEEF-GAEVI--SLNEIPDHLHRADIVISSTASPLPIIGKGMVETA--LKTRKHQPMLLVDIAVPRDVESQVGDLNDAYLYSVDDLQSIVDGNIEQRKVEAIQAEAIVSEES 327          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VIBPA (Glutamyl-tRNA reductase OS=Vibrio parahaemolyticus GN=hemA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 82/206 (39.81%), Postives = 121/206 (58.74%), Query Frame = 1
Query:   28 NISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNS 633
            +I  LF+   SV KRVRTET+I             LA       S +T  +L++GAG+  +LV KHL + GCTKM+V NR++ER   + E+  G E+I   L+E+    A AD+V +STAS  P+  K  V      E A+   R    L +DI+VPR+V + V ++  A +Y+VDDL+ ++ +N E R  +A++A+AI+SEES S
Sbjct:  135 SIDKLFQKTFSVAKRVRTETDIGGNAVSVAYAACTLAKHIFESLSDST--VLLVGAGETIELVAKHLASNGCTKMIVANRTKERAQGLAEQF-GAEVI--SLNEIPDYLARADIVISSTASPLPIIGKGMV------ETALKQRRHQPILLVDIAVPRDVEAQVGELNDAYLYSVDDLQSIIDSNIEQRKVEAIQAEAIVSEESAS 329          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_PROM23.356e-2835.19Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_PROMM3.373e-2834.72Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_SYNPX5.717e-2834.26Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_PROM37.441e-2834.26Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_SYNPW9.686e-2834.26Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_PROM59.766e-2833.49Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_SYNS31.261e-2735.81Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_PROM42.137e-2736.07Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_VIBSL2.176e-2741.84Glutamyl-tRNA reductase OS=Vibrio splendidus (stra... [more]
HEM1_VIBPA2.176e-2739.81Glutamyl-tRNA reductase OS=Vibrio parahaemolyticus... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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