FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CHLP8 (Glutamyl-tRNA reductase OS=Chlorobaculum parvum (strain NCIB 8327) GN=hemA PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13
Identity = 53/196 (27.04%), Postives = 101/196 (51.53%), Query Frame = 1
Query:   52 AISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEII-YKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL----FIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            A SV K+V+T T +            ELA      S+ +  ++L+IGAG+ G+L  KH+ AK    +V+ NR++ +  A+ EEL    ++ Y+   E L    + D++ T+ ++      K+++ +   ++ ++   RL     +D+ +PRNV   V  ++   + ++D LK ++  N E R  +  + ++II EE
Sbjct:  145 AFSVAKKVKTRTKLMEGAVSVSYAAVELAQKIF--SNLSMKKVLLIGAGETGELAAKHMYAKNARNIVITNRTQSKAEALAEELGTNRVLPYESYKEHLH---EFDIIITAVST------KEYILNAAEMQQSMAKRRLKPVIILDLGLPRNVDPEVGALQNMFLKDIDALKHIIDKNLERRRAELPKVKSIIDEE 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CHLL2 (Glutamyl-tRNA reductase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=hemA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13
Identity = 56/204 (27.45%), Postives = 99/204 (48.53%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTAS------EAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            I+ L   A SV K+V+T+T I            ELA      S+ +  ++L+IGAG+ G+L  KH+  K    +V+ NR+  +  A+ EEL   +++  P         + D++ T+ ++      EA +      + L PV        + +D+ +PRNV   ++ ++   + ++D LK ++  N E R  +  + QAII EE
Sbjct:  138 ITRLCHTAFSVAKKVKTKTKIMEGAVSVSYAAVELAQKIF--SNLSMKKILLIGAGETGELAAKHMCQKNARNIVITNRTLSKAEALAEELGTGKVL--PFESYKEYLHEFDIIITAVSTKEYVLREAEMHQSMQKRRLKPV--------IILDLGLPRNVDPDISRLQNMFLKDIDALKHIIDKNLEKRRGELPKVQAIIEEE 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_STAS1 (Glutamyl-tRNA reductase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=hemA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 57/206 (27.67%), Postives = 102/206 (49.51%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQ 639
            G   + LFK AI+  K+   ET+I            EL+     + ++  A  L+IGAG M +L + +L+  G T + +VNR+  +   +  + +   + ++P+  +     D D+V +ST+SE  +   + +Q +   E     L + IDI+VPR++   +  +     Y+VDDLK +V AN  +R    + A+ II    N ++
Sbjct:  135 GTIFNHLFKQAITFAKKAHNETDIADNAVSVSYAAVELSKKVFGKVNNKQA--LIIGAGDMSELSLLNLIGSGVTDITIVNRTLSKAQDLAMKHH---VKFEPMESLPRLLVDVDIVISSTSSENYIVTNEMLQSIS-TERKHDSL-VMIDIAVPRDIEPNIDTIHDMFSYDVDDLKGLVDANLRER---QLAAEQIIQNIPNEIE 330          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_RUTMC (Glutamyl-tRNA reductase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=hemA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 58/196 (29.59%), Postives = 95/196 (48.47%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            LF+H  S  K+VRT T I            +L+     + S  T  +L+IGAG+M +L   +L  KG  KM+V NR+ E    I        I  K  S   S    AD++ +STA+  P+  K  ++    ++         +DI++PR++   V  ++   +Y +DDL +VV  N  +R ++   AQ II +++
Sbjct:  141 LFQHTFSTAKKVRTNTQIGASPVSIAYCAVKLSEKIFEQLSEQT--VLLIGAGEMIELCAHYLNQKGVNKMIVANRTIENAKKIAHLYQAQSIGLKQFS---SFVYKADIIISSTAASMPIIGKGLIESA--LKKRKHKPIFMLDIAIPRDIEPEVGQLDDVYLYTIDDLGQVVNDNIGNREKEKGLAQEIIVKQN 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_RALEH (Glutamyl-tRNA reductase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hemA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 65/218 (29.82%), Postives = 105/218 (48.17%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKP--LSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            G  ++ LF+   +V K VR +T I             LA  ++ ES  +T R+L IGAG+M +L   H  A+   ++VV NR+ ER   + E+L+G  +      L+++     + D+V + TAS  P+        L  VE AV   +    + +D++VPR+V   VA ++   +Y VDDL  +V      R     +A+AII     +     +HW
Sbjct:  141 GTYLNQLFQRTFAVAKEVRGQTEIGAHSVSMAAAAVRLA-QRIFESV-STQRVLFIGAGEMIELCATHFAAQQPRQIVVANRTVERGEKLAEQLSGQGLTANAIRLTDLGERLHEFDIVVSCTASSLPII------GLGAVERAVKRRKHRPIMMVDLAVPRDVEPEVARLDDVFLYTVDDLGAIVREGNAMRQAAVAQAEAIIESRVQNF----MHW 346          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_NITEU (Glutamyl-tRNA reductase OS=Nitrosomonas europaea GN=hemA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 62/206 (30.10%), Postives = 97/206 (47.09%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            +F+    V K VRT T I             LA       S    ++L IGAG+M +L   H VA+    + V NR+ ER  A+    N   I    L + L+     D+V TSTAS  P+  K  ++    ++         +D++VPR+V + VA+++   +Y VDDL ++V    ++R     +A+ II  ESN +    +HW
Sbjct:  137 MFQRTFFVAKEVRTSTEIGACSVSMAAASARLAERIFGNISEQ--KVLFIGAGEMIELCAAHFVARHPVHVTVANRTVERAEALARRFNAHPISLGELPDQLALH---DIVVTSTASPLPILGKGMLERA--IKQRKHRPVFIVDLAVPRDVEAEVAELDDVFLYYVDDLADIVKEGLDNRQGAVTQAETII--ESNVVDF--MHW 331          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_LISW6 (Glutamyl-tRNA reductase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=hemA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 50/201 (24.88%), Postives = 99/201 (49.25%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            G  ++ LF+  ++  K+V  +T I            E+A  K    S    +++++GAG+M +L +++L   G   + ++NR++     + ++       Y+ ++  LS A   D+V  ST+++ P+  +  +Q L   ++      L IDI +PRNV    + +    +Y++DDL  VV+AN  +R +  +  +  I  E
Sbjct:  135 GTLLNKLFREVVTFAKKVHHQTKINENAVSVSYAAVEVA--KKLYGSLENKKIVLVGAGEMSELALQNLAGSGIADITIINRTKANAEILADQFQAKVGTYEEMNNYLSIA---DIVLVSTSADEPIIKQKDMQILMSQKSTS---MLVIDIGLPRNVEHDCSYIPNFHLYDIDDLAGVVSANSLERQKIVLALENTIETE 327          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_JANMA (Glutamyl-tRNA reductase OS=Janthinobacterium sp. (strain Marseille) GN=hemA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 61/218 (27.98%), Postives = 95/218 (43.58%), Query Frame = 1
Query:   16 GFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            G G  +  +F+   +V K VR+ T I             L+     + S     +L IGAG+M +L   H  A+    + + NR+ ER   +    NG  I    L + L   A  D+V +STAS  P+        L  VE A+   R      +D++VPR++ + +  ++   +Y VDDL   V    E+R     +A+AII     S     +HW
Sbjct:  143 GLGTYLHQMFQRTFAVAKEVRSTTEIGAHSVSMAAASVRLSQRIFDKISEQN--VLFIGAGEMIELSATHFAAQNPKSVTIANRTLERGQTLAHRFNGKAIRLADLPDQL---ASYDIVISSTASSLPII------GLGMVERAIKARRHKPMFMVDLAVPRDIEAEIGRLDDVFLYTVDDLGSFVQTGVENRQAAVAQAEAIIETRVRSF----MHW 345          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BORA1 (Glutamyl-tRNA reductase OS=Bordetella avium (strain 197N) GN=hemA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 65/216 (30.09%), Postives = 99/216 (45.83%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            G  +  LF+   +V K VR++T I             LA     +   A  R L IGAG+M +L   H  A+    MVV NR+ ER  ++    +   +    L+E L   A+ DVV + TAS  P+        L  VE A    R    + ID++VPR++   V  ++   +Y+VDDL  +V +  + R    ++A+AII         G +HW
Sbjct:  137 GTLLHQLFQRTFAVAKEVRSQTEIGAHSVSMAAAAVRLAERVFGDLGQA--RTLFIGAGEMIELCATHFAAQHPRSMVVANRTAERAESLAGRFSAGTMKLADLTERL---AEFDVVVSCTASSLPIL------GLGMVERATRQRRHRPMVMIDLAVPRDIEPEVGRLDDVYLYSVDDLGRLVQSGTDARRAAVVQAEAIIETRVQ----GFMHW 337          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_HERAR (Glutamyl-tRNA reductase OS=Herminiimonas arsenicoxydans GN=hemA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 61/218 (27.98%), Postives = 94/218 (43.12%), Query Frame = 1
Query:   16 GFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            G G  +  +F+   +V K VR+ T I             L+       S     +L IGAG+M +L   H  A+    + + NR+ ER   +    NG  I    L + L   A  D+V +STAS  P+        L  VE A+   R      +D++VPR++ + +  ++   +Y VDDL   V    E+R     +A+AII     S     +HW
Sbjct:  143 GLGTYLHQMFQRTFAVAKEVRSNTEIGAHSVSMAAASVRLSQRIFDTISEQN--VLFIGAGEMIELCATHFAAQNPKSLTIANRTLERGETLAHRFNGRAIRLADLPDQL---ASYDIVISSTASSLPII------GLGMVERAIKARRHKPMFMVDLAVPRDIETEIGRLDDVFLYTVDDLGTFVQTGLENRQAAVTQAEAIIETRVQSF----MHW 345          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_CHLP81.048e-1327.04Glutamyl-tRNA reductase OS=Chlorobaculum parvum (s... [more]
HEM1_CHLL21.048e-1327.45Glutamyl-tRNA reductase OS=Chlorobium limicola (st... [more]
HEM1_STAS11.369e-1327.67Glutamyl-tRNA reductase OS=Staphylococcus saprophy... [more]
HEM1_RUTMC1.369e-1329.59Glutamyl-tRNA reductase OS=Ruthia magnifica subsp.... [more]
HEM1_RALEH1.369e-1329.82Glutamyl-tRNA reductase OS=Ralstonia eutropha (str... [more]
HEM1_NITEU1.369e-1330.10Glutamyl-tRNA reductase OS=Nitrosomonas europaea G... [more]
HEM1_LISW61.369e-1324.88Glutamyl-tRNA reductase OS=Listeria welshimeri ser... [more]
HEM1_JANMA1.369e-1327.98Glutamyl-tRNA reductase OS=Janthinobacterium sp. (... [more]
HEM1_BORA11.369e-1330.09Glutamyl-tRNA reductase OS=Bordetella avium (strai... [more]
HEM1_HERAR1.788e-1327.98Glutamyl-tRNA reductase OS=Herminiimonas arsenicox... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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