FC930965
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNS9 (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain CC9902) GN=hemA PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 3.622e-27 Identity = 75/216 (34.72%), Postives = 123/216 (56.94%), Query Frame = 1 Query: 1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627 GQ G ++ L A++ GK+VR+ETN+ ELA +KL +S S + ++ V+GAG+M +L+++HL AKG + +V+VNR+ E + + + + +PL+++ + + + +VFTSTA+E P+ L P+ LRL IDI VPRNV + A V+ ++VDDL+EVVA N+E R A EA+ ++ +E+ Sbjct: 128 GQEHKSLGPILNRLLTQAVTTGKKVRSETNLGTGAVSISSAAVELAQLKLGQSRGVDDLVSLESEQIAVVGAGRMSRLLLQHLQAKGASGVVLVNRTVETAERLANDFPDLSVECRPLTDLNTFLSTSSLVFTSTAAEDPII---DASRLKPLNRR-SQLRL-IDIGVPRNVAADAATVDGVESHDVDDLEEVVARNQEARQAIAREAEHLLQDEA 338 HSP 2 Score: 26.1794 bits (56), Expect = 3.622e-27 Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 3 Query: 627 KQFAAWRDSLETVPTI 674 +QF W DSLE VPTI Sbjct: 339 QQFLDWWDSLEAVPTI 354
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROMA (Glutamyl-tRNA reductase OS=Prochlorococcus marinus GN=hemA PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.714e-27 Identity = 72/216 (33.33%), Postives = 121/216 (56.02%), Query Frame = 1 Query: 1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627 GQ G ++ L A+S GK+VR++TN+ ELA +KL +S + + ++ VIGAG+M +L+I+HL +KGC+K+ ++NR+ R ++ ++ +++ L ++ C + ++FTSTAS P+ + + L IDI VPRN+ S V+ + Y+VDDL+EVVA N++ R + A+EAQ +I EE+ Sbjct: 128 GQDYKSIGPILNRLLTQAVSTGKKVRSDTNLGTGAVSISSAAVELAQLKLGQSLGKDQLMTLQSEKVAVIGAGRMSRLLIQHLQSKGCSKLTLLNRTLNRAESLAKDFPDLDVKCGLLDDLDKCIEFSTLIFTSTASNTPIINSELLSGF----KRNNNLLRLIDIGVPRNIASDVSGLPGFEAYDVDDLQEVVARNQDARQQIAIEAQNLIDEEA 339 HSP 2 Score: 21.1718 bits (43), Expect = 4.714e-27 Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 3 Query: 633 FAAWRDSLETVPTI 674 F W SLE VPTI Sbjct: 342 FLEWWASLEAVPTI 355
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNSC (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain CC9605) GN=hemA PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 4.715e-27 Identity = 73/216 (33.80%), Postives = 122/216 (56.48%), Query Frame = 1 Query: 1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627 GQ G ++ L A++ GKRVR+ETN+ ELA +KL +S + + ++ V+GAG+M +L+++HL AKG + +V++NR+ ER + + + + +PL+++ + ++FTSTA++ P+ L P+ LRL IDI VPRN+ + ADV ++VDDL+EVVA N+E R A EA+ ++ +E+ Sbjct: 128 GQEHKSLGPILNRLLTQAVTTGKRVRSETNLGTGAVSISSAAVELAQLKLGQSRGLDHLVTLESEQIAVVGAGRMSRLLLQHLQAKGASGVVLLNRTVERAEQLSADFPDLPVQCRPLTDLDQYLSTCSLMFTSTAADDPII---DAARLAPLNRR-SKLRL-IDIGVPRNIAADAADVNGVESHDVDDLQEVVARNQEARQAMAREAEQLLQQEA 338 HSP 2 Score: 26.5646 bits (57), Expect = 4.715e-27 Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 3 Query: 627 KQFAAWRDSLETVPTI 674 +QF W DSLE VPTI Sbjct: 339 QQFLEWWDSLEAVPTI 354
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROMT (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain NATL2A) GN=hemA PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.353e-26 Identity = 75/217 (34.56%), Postives = 123/217 (56.68%), Query Frame = 1 Query: 1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHV--QDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624 GQ G ++ L A+S GKRVR+ETN+ ELA +KL ++ + T ++ V+GAG+M +L+++HL +KGC + ++NR+++R + ++I + + E+ SC + + +VFTSTA+ P+ + + D P+ LRL IDI VPRN+ S V ++VDDL+EVV+ N+E R + A+EA+ +I EE Sbjct: 128 GQDHHSLGPILNRLLTQAVSTGKRVRSETNLGTGAVSISSAAVELAQLKLGQAHGRDQLMTLETEKVAVVGAGRMSRLLLQHLQSKGCCSLTLLNRTKKRAEDLSAAFPDIQIDCQLIDELDSCLSLSTLVFTSTAANEPIIDAEKLIKIDRKPL------LRL-IDIGVPRNISSDAKSVSGIESHDVDDLQEVVSRNQEARQKLALEAEGLIEEE 337 HSP 2 Score: 21.9422 bits (45), Expect = 1.353e-26 Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 3 Query: 633 FAAWRDSLETVPTI 674 F W DSL VPTI Sbjct: 341 FLEWWDSLAAVPTI 354
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROM1 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain NATL1A) GN=hemA PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 1.761e-26 Identity = 75/217 (34.56%), Postives = 122/217 (56.22%), Query Frame = 1 Query: 1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHV--QDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624 GQ G ++ L A+S GKRVR+ETN+ ELA +KL ++ + T ++ V+GAG+M +L+++HL +KGC + ++NR+ +R + ++I + + E+ SC + + +VFTSTA+ P+ + + D P+ LRL IDI VPRN+ S V ++VDDL+EVV+ N+E R + A+EA+ +I EE Sbjct: 128 GQDHHSLGPILNRLLTQAVSTGKRVRSETNLGTGAVSISSAAVELAQLKLGQAHGRDQLMTLETEKVAVVGAGRMSRLLLQHLQSKGCCSLTLLNRTRKRAEDLSAAFPDIQIDCQLIDELDSCLSLSTLVFTSTAANEPIIDAEKLINIDRKPL------LRL-IDIGVPRNISSDAKSVSGIESHDVDDLQEVVSRNQEARQKLALEAEGLIEEE 337 HSP 2 Score: 21.9422 bits (45), Expect = 1.761e-26 Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 3 Query: 633 FAAWRDSLETVPTI 674 F W DSL VPTI Sbjct: 341 FLEWWDSLAAVPTI 354
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VIBHB (Glutamyl-tRNA reductase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hemA PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26 Identity = 80/204 (39.22%), Postives = 118/204 (57.84%), Query Frame = 1 Query: 28 NISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627 +I LF+ SV KRVRTET+I LA S +T +L++GAG+ +LV KHL + GCTKM+V NR+ ER + E+ G E+I L+E+ AD+V +STAS P+ K V E A+ R L +DI+VPR+V + V ++ A +Y+VDDL+ ++ +N E R +A++A+AI+SEES Sbjct: 135 SIDKLFQKTFSVAKRVRTETDIGGNAVSVAYAACTLAKHIFESLSDST--VLLVGAGETIELVAKHLASNGCTKMIVANRTRERALGLGEQF-GAEVI--SLNEIPDHLPRADIVISSTASPLPIIGKGMV------ETALKKRRHQPMLLVDIAVPRDVEAQVGELSDAYLYSVDDLQSIIDSNIEQRKVEAIQAEAIVSEES 327
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROMP (Glutamyl-tRNA reductase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=hemA PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26 Identity = 75/216 (34.72%), Postives = 121/216 (56.02%), Query Frame = 1 Query: 1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVE-AAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624 GQ G ++ L ++S GK+VR+ETN+ ELA +K+ + S + ++LV+GAG+M +L+I HL +KGC ++ ++NR+ ER + + +EI K L+E+ + + +VFTSTASE P DL VE ++ FIDI VPRN+ + V ++VDDL+EVV+ N+E R + A EA++++ +E Sbjct: 128 GQENQSTGPILNRLLSQSVSAGKKVRSETNLGTGAVSISSAAVELAQLKIGQDHGVDGLVSLKSEKVLVVGAGRMSRLLITHLKSKGCNRLTLLNRNIERAVNLAGDFPDLEINCKSLNELDKNISLSSLVFTSTASEKPFI------DLARVEKISLNNKLKFIDIGVPRNISNDVKHHAFIESFDVDDLEEVVSRNQEFRQKIAKEAESLVKDE 337
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PHOPR (Glutamyl-tRNA reductase OS=Photobacterium profundum GN=hemA PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26 Identity = 78/196 (39.80%), Postives = 112/196 (57.14%), Query Frame = 1 Query: 40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627 LF +V KRVRTET+I LA S T +L++GAG+ +LV +HLV +GC K++V NR++ER A + EE G E+I P E+ AD+V +STAS P+ K V+ ++A LF+DI+VPR+V + V D+ +Y VDDL ++ N+E R A++A+AIISEES Sbjct: 139 LFHKTFTVAKRVRTETDIGGNAVSVAYAACTLAKQIFESLSDTT--VLLVGAGETIELVSRHLVEQGCNKLIVANRTKERAANLAEEF-GAEVIGLP--EIPEHLHRADIVISSTASPLPIVGKGMVEKA--IKARRHQPMLFVDIAVPRDVEAEVGDLNDVYLYTVDDLHSIIEKNREQRKVAAIQAEAIISEES 327
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VIBFM (Glutamyl-tRNA reductase OS=Vibrio fischeri (strain MJ11) GN=hemA PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25 Identity = 74/199 (37.19%), Postives = 111/199 (55.78%), Query Frame = 1 Query: 31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627 I LF+ SV KRVRTETNI LA S +T +L++GAG+ +LV KHL GC +++V NR+ ER + E+ N I + E L AD++ +STAS P+ K V+ ++ LF+DI+VPR++ VA++ A +Y+VDDL+ ++ N E R +A++A+AI+SEES Sbjct: 137 IEKLFQQDFSVAKRVRTETNIGGNAVSVAYAACTLARQIFESLSDST--VLLVGAGETIELVAKHLDDSGCKRLIVANRTRERAMGLAEQFNAEVISLPEIPEHLP---KADIIISSTASPLPIIGKGMVESA--LKLRKHQPMLFVDIAVPRDIEGEVAELNDAYLYSVDDLQSIIDHNIEQRKIEAIQAEAIVSEES 328
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VIBF1 (Glutamyl-tRNA reductase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=hemA PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25 Identity = 74/199 (37.19%), Postives = 111/199 (55.78%), Query Frame = 1 Query: 31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627 I LF+ SV KRVRTETNI LA S +T +L++GAG+ +LV KHL GC +++V NR+ ER + E+ N I + E L AD++ +STAS P+ K V+ ++ LF+DI+VPR++ VA++ A +Y+VDDL+ ++ N E R +A++A+AI+SEES Sbjct: 137 IEKLFQQDFSVAKRVRTETNIGGNAVSVAYAACTLARQIFESLSDST--VLLVGAGETIELVAKHLDDSGCKRLIVANRTRERAMGLAEQFNAEVISLPEIPEHLP---KADIIISSTASPLPIIGKGMVESA--LKLRKHQPMLFVDIAVPRDIEGEVAELNDAYLYSVDDLQSIIDHNIEQRKIEAIQAEAIVSEES 328 The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 465
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bpback to top |