FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNS9 (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain CC9902) GN=hemA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.622e-27
Identity = 75/216 (34.72%), Postives = 123/216 (56.94%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            GQ     G  ++ L   A++ GK+VR+ETN+            ELA +KL +S       S  + ++ V+GAG+M +L+++HL AKG + +V+VNR+ E    +  +   + +  +PL+++ +  + + +VFTSTA+E P+        L P+      LRL IDI VPRNV +  A V+    ++VDDL+EVVA N+E R   A EA+ ++ +E+
Sbjct:  128 GQEHKSLGPILNRLLTQAVTTGKKVRSETNLGTGAVSISSAAVELAQLKLGQSRGVDDLVSLESEQIAVVGAGRMSRLLLQHLQAKGASGVVLVNRTVETAERLANDFPDLSVECRPLTDLNTFLSTSSLVFTSTAAEDPII---DASRLKPLNRR-SQLRL-IDIGVPRNVAADAATVDGVESHDVDDLEEVVARNQEARQAIAREAEHLLQDEA 338          

HSP 2 Score: 26.1794 bits (56), Expect = 3.622e-27
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  627 KQFAAWRDSLETVPTI 674
            +QF  W DSLE VPTI
Sbjct:  339 QQFLDWWDSLEAVPTI 354          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROMA (Glutamyl-tRNA reductase OS=Prochlorococcus marinus GN=hemA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.714e-27
Identity = 72/216 (33.33%), Postives = 121/216 (56.02%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            GQ     G  ++ L   A+S GK+VR++TN+            ELA +KL +S       +  + ++ VIGAG+M +L+I+HL +KGC+K+ ++NR+  R  ++ ++   +++    L ++  C   + ++FTSTAS  P+   + +            L   IDI VPRN+ S V+ +     Y+VDDL+EVVA N++ R + A+EAQ +I EE+
Sbjct:  128 GQDYKSIGPILNRLLTQAVSTGKKVRSDTNLGTGAVSISSAAVELAQLKLGQSLGKDQLMTLQSEKVAVIGAGRMSRLLIQHLQSKGCSKLTLLNRTLNRAESLAKDFPDLDVKCGLLDDLDKCIEFSTLIFTSTASNTPIINSELLSGF----KRNNNLLRLIDIGVPRNIASDVSGLPGFEAYDVDDLQEVVARNQDARQQIAIEAQNLIDEEA 339          

HSP 2 Score: 21.1718 bits (43), Expect = 4.714e-27
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 3
Query:  633 FAAWRDSLETVPTI 674
            F  W  SLE VPTI
Sbjct:  342 FLEWWASLEAVPTI 355          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNSC (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain CC9605) GN=hemA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.715e-27
Identity = 73/216 (33.80%), Postives = 122/216 (56.48%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            GQ     G  ++ L   A++ GKRVR+ETN+            ELA +KL +S       +  + ++ V+GAG+M +L+++HL AKG + +V++NR+ ER   +  +   + +  +PL+++    +   ++FTSTA++ P+        L P+      LRL IDI VPRN+ +  ADV     ++VDDL+EVVA N+E R   A EA+ ++ +E+
Sbjct:  128 GQEHKSLGPILNRLLTQAVTTGKRVRSETNLGTGAVSISSAAVELAQLKLGQSRGLDHLVTLESEQIAVVGAGRMSRLLLQHLQAKGASGVVLLNRTVERAEQLSADFPDLPVQCRPLTDLDQYLSTCSLMFTSTAADDPII---DAARLAPLNRR-SKLRL-IDIGVPRNIAADAADVNGVESHDVDDLQEVVARNQEARQAMAREAEQLLQQEA 338          

HSP 2 Score: 26.5646 bits (57), Expect = 4.715e-27
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  627 KQFAAWRDSLETVPTI 674
            +QF  W DSLE VPTI
Sbjct:  339 QQFLEWWDSLEAVPTI 354          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROMT (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain NATL2A) GN=hemA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.353e-26
Identity = 75/217 (34.56%), Postives = 123/217 (56.68%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHV--QDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ     G  ++ L   A+S GKRVR+ETN+            ELA +KL ++       +  T ++ V+GAG+M +L+++HL +KGC  + ++NR+++R   +      ++I  + + E+ SC + + +VFTSTA+  P+   + +   D  P+      LRL IDI VPRN+ S    V     ++VDDL+EVV+ N+E R + A+EA+ +I EE
Sbjct:  128 GQDHHSLGPILNRLLTQAVSTGKRVRSETNLGTGAVSISSAAVELAQLKLGQAHGRDQLMTLETEKVAVVGAGRMSRLLLQHLQSKGCCSLTLLNRTKKRAEDLSAAFPDIQIDCQLIDELDSCLSLSTLVFTSTAANEPIIDAEKLIKIDRKPL------LRL-IDIGVPRNISSDAKSVSGIESHDVDDLQEVVSRNQEARQKLALEAEGLIEEE 337          

HSP 2 Score: 21.9422 bits (45), Expect = 1.353e-26
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 3
Query:  633 FAAWRDSLETVPTI 674
            F  W DSL  VPTI
Sbjct:  341 FLEWWDSLAAVPTI 354          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROM1 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain NATL1A) GN=hemA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.761e-26
Identity = 75/217 (34.56%), Postives = 122/217 (56.22%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHV--QDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ     G  ++ L   A+S GKRVR+ETN+            ELA +KL ++       +  T ++ V+GAG+M +L+++HL +KGC  + ++NR+ +R   +      ++I  + + E+ SC + + +VFTSTA+  P+   + +   D  P+      LRL IDI VPRN+ S    V     ++VDDL+EVV+ N+E R + A+EA+ +I EE
Sbjct:  128 GQDHHSLGPILNRLLTQAVSTGKRVRSETNLGTGAVSISSAAVELAQLKLGQAHGRDQLMTLETEKVAVVGAGRMSRLLLQHLQSKGCCSLTLLNRTRKRAEDLSAAFPDIQIDCQLIDELDSCLSLSTLVFTSTAANEPIIDAEKLINIDRKPL------LRL-IDIGVPRNISSDAKSVSGIESHDVDDLQEVVSRNQEARQKLALEAEGLIEEE 337          

HSP 2 Score: 21.9422 bits (45), Expect = 1.761e-26
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 3
Query:  633 FAAWRDSLETVPTI 674
            F  W DSL  VPTI
Sbjct:  341 FLEWWDSLAAVPTI 354          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VIBHB (Glutamyl-tRNA reductase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hemA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 80/204 (39.22%), Postives = 118/204 (57.84%), Query Frame = 1
Query:   28 NISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            +I  LF+   SV KRVRTET+I             LA       S +T  +L++GAG+  +LV KHL + GCTKM+V NR+ ER   + E+  G E+I   L+E+      AD+V +STAS  P+  K  V      E A+   R    L +DI+VPR+V + V ++  A +Y+VDDL+ ++ +N E R  +A++A+AI+SEES
Sbjct:  135 SIDKLFQKTFSVAKRVRTETDIGGNAVSVAYAACTLAKHIFESLSDST--VLLVGAGETIELVAKHLASNGCTKMIVANRTRERALGLGEQF-GAEVI--SLNEIPDHLPRADIVISSTASPLPIIGKGMV------ETALKKRRHQPMLLVDIAVPRDVEAQVGELSDAYLYSVDDLQSIIDSNIEQRKVEAIQAEAIVSEES 327          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PROMP (Glutamyl-tRNA reductase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=hemA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 75/216 (34.72%), Postives = 121/216 (56.02%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVE-AAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ     G  ++ L   ++S GK+VR+ETN+            ELA +K+ +        S  + ++LV+GAG+M +L+I HL +KGC ++ ++NR+ ER   +  +   +EI  K L+E+    + + +VFTSTASE P        DL  VE  ++     FIDI VPRN+ + V        ++VDDL+EVV+ N+E R + A EA++++ +E
Sbjct:  128 GQENQSTGPILNRLLSQSVSAGKKVRSETNLGTGAVSISSAAVELAQLKIGQDHGVDGLVSLKSEKVLVVGAGRMSRLLITHLKSKGCNRLTLLNRNIERAVNLAGDFPDLEINCKSLNELDKNISLSSLVFTSTASEKPFI------DLARVEKISLNNKLKFIDIGVPRNISNDVKHHAFIESFDVDDLEEVVSRNQEFRQKIAKEAESLVKDE 337          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PHOPR (Glutamyl-tRNA reductase OS=Photobacterium profundum GN=hemA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 78/196 (39.80%), Postives = 112/196 (57.14%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            LF    +V KRVRTET+I             LA       S  T  +L++GAG+  +LV +HLV +GC K++V NR++ER A + EE  G E+I  P  E+      AD+V +STAS  P+  K  V+    ++A      LF+DI+VPR+V + V D+    +Y VDDL  ++  N+E R   A++A+AIISEES
Sbjct:  139 LFHKTFTVAKRVRTETDIGGNAVSVAYAACTLAKQIFESLSDTT--VLLVGAGETIELVSRHLVEQGCNKLIVANRTKERAANLAEEF-GAEVIGLP--EIPEHLHRADIVISSTASPLPIVGKGMVEKA--IKARRHQPMLFVDIAVPRDVEAEVGDLNDVYLYTVDDLHSIIEKNREQRKVAAIQAEAIISEES 327          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VIBFM (Glutamyl-tRNA reductase OS=Vibrio fischeri (strain MJ11) GN=hemA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25
Identity = 74/199 (37.19%), Postives = 111/199 (55.78%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            I  LF+   SV KRVRTETNI             LA       S +T  +L++GAG+  +LV KHL   GC +++V NR+ ER   + E+ N   I    + E L     AD++ +STAS  P+  K  V+    ++       LF+DI+VPR++   VA++  A +Y+VDDL+ ++  N E R  +A++A+AI+SEES
Sbjct:  137 IEKLFQQDFSVAKRVRTETNIGGNAVSVAYAACTLARQIFESLSDST--VLLVGAGETIELVAKHLDDSGCKRLIVANRTRERAMGLAEQFNAEVISLPEIPEHLP---KADIIISSTASPLPIIGKGMVESA--LKLRKHQPMLFVDIAVPRDIEGEVAELNDAYLYSVDDLQSIIDHNIEQRKIEAIQAEAIVSEES 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VIBF1 (Glutamyl-tRNA reductase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=hemA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25
Identity = 74/199 (37.19%), Postives = 111/199 (55.78%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            I  LF+   SV KRVRTETNI             LA       S +T  +L++GAG+  +LV KHL   GC +++V NR+ ER   + E+ N   I    + E L     AD++ +STAS  P+  K  V+    ++       LF+DI+VPR++   VA++  A +Y+VDDL+ ++  N E R  +A++A+AI+SEES
Sbjct:  137 IEKLFQQDFSVAKRVRTETNIGGNAVSVAYAACTLARQIFESLSDST--VLLVGAGETIELVAKHLDDSGCKRLIVANRTRERAMGLAEQFNAEVISLPEIPEHLP---KADIIISSTASPLPIIGKGMVESA--LKLRKHQPMLFVDIAVPRDIEGEVAELNDAYLYSVDDLQSIIDHNIEQRKIEAIQAEAIVSEES 328          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_SYNS93.622e-2734.72Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_PROMA4.714e-2733.33Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_SYNSC4.715e-2733.80Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_PROMT1.353e-2634.56Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_PROM11.761e-2634.56Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_VIBHB3.142e-2639.22Glutamyl-tRNA reductase OS=Vibrio harveyi (strain ... [more]
HEM1_PROMP4.103e-2634.72Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_PHOPR4.103e-2639.80Glutamyl-tRNA reductase OS=Photobacterium profundu... [more]
HEM1_VIBFM2.659e-2537.19Glutamyl-tRNA reductase OS=Vibrio fischeri (strain... [more]
HEM1_VIBF12.659e-2537.19Glutamyl-tRNA reductase OS=Vibrio fischeri (strain... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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