FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CHLPD (Glutamyl-tRNA reductase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=hemA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 55/197 (27.92%), Postives = 95/197 (48.22%), Query Frame = 1
Query:   52 AISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTA------SEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            A SV K+V+T+T I            ELA      S+ +  ++L+IGAG+ G+L  KH+  K    +V+ NR+  +  A+ EEL   +++  P         + D++ T+ +      SEA +      + L PV        + +D+ +PRNV   +A ++   + ++D LK ++  N E R  +  +  AII EE
Sbjct:  145 AFSVAKKVKTKTKIMEGAVSVSYAAVELAQKIF--SNLSMKKILLIGAGETGELAAKHMFQKNARNIVITNRTLSKAEALAEELGTKKVL--PFESYKDYLHEFDIIITAVSTKEYVLSEAEMHQTMMKRRLKPV--------IILDLGLPRNVDPDIAKLQNMFLKDIDALKHIIDKNLERRSAELPKVNAIIEEE 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CAMC5 (Glutamyl-tRNA reductase OS=Campylobacter curvus (strain 525.92) GN=hemA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 59/203 (29.06%), Postives = 100/203 (49.26%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            G +IS L  +A     RVR ET I              A        + TA  +VIGAG+MG+L  KHL+  G   ++++NRS + V  + E L G +  +  + ++       D++F+ST++   +   + ++   P E      R F DI+VPR++   + + +   VY+VD L+E+V  N   R  +A  A +I+ + +N
Sbjct:  136 GEHISRLVHYACKCAARVRNETQISKNPISVSSVAVAKAKEIFGTLENKTA--VVIGAGEMGELAAKHLITSG-ANVIIINRSSDHVEELVENL-GDKASWDSILKLKEYINKYDLIFSSTSAPHAIITGELIE---PQEFR----RYFFDIAVPRDID--LVNTDKISVYSVDSLEEMVRRNLALREEQAQTAYSIVGQSTN 325          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM11_PYRCJ (Glutamyl-tRNA reductase 1 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=hemA1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 63/208 (30.29%), Postives = 97/208 (46.63%), Query Frame = 1
Query:   28 NISGLFK----HAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQ 639
            N+ GL K     A++VGKRVRTET I                 +LP    +     VIGAG +G+ V+K L+  G  ++ VVNR+ E+ A +     GVE+       +  C  + DVV+T+ +S  P+     V  +PP       ++L +D+ VPRN     A      V  +D L+E+       R  +  +A+ I+ EE   L+
Sbjct:  117 NLRGLLKTVVERAVAVGKRVRTETGISRGPRGLGSLSIVYLSRRLPLREISVC---VIGAGAVGRGVVKELIDAGVRRVAVVNRTVEKAADL-----GVEVRPLTSENVEWCLREFDVVYTAVSSFEPV-----VVYVPPGSR----VKLVVDLGVPRN----TAPNLPVEVVTLDHLRELAEEFNRQRAEEVSKAEKIVEEEVARLE 303          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_RALME (Glutamyl-tRNA reductase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=hemA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 68/218 (31.19%), Postives = 106/218 (48.62%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELN--GVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            G  ++ LF+   +V K VR +T I             LA  ++ ES  +T R+L IGAG+M +L   H  A+   ++VV NR+ ER   + E+L+  G+      L ++     + D+V + TAS  P+        L  VE AV   +    + +D++VPR+V   VA ++   +Y VDDL  VV      R     +A+AII    +S  L  +HW
Sbjct:  141 GTYLNQLFQRTFAVAKEVRGQTEIGAHSVSMAAAAVRLA-QRIFESV-STQRVLFIGAGEMIELCATHFAAQTPRQIVVANRTVERGEKLAEQLSEQGLTTQAIRLQDLGDRLHEFDIVVSCTASSLPII------GLGAVERAVKRRKHRPIMMVDLAVPRDVEPEVARLDDVFLYTVDDLGAVVREGNALRQAAVAQAEAII----DSRVLNFMHW 346          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_PELLD (Glutamyl-tRNA reductase OS=Pelodictyon luteolum (strain DSM 273) GN=hemA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 53/202 (26.24%), Postives = 98/202 (48.51%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL----FIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            I+ L   A SV K+V+T+T I            ELA      S+ +  ++L++GAG+ G+L  KH+ AK    +V+ NR++ +  A+ EEL    ++  P         + D++ T+ ++      KD++     +  A+   RL     +D+ +PRN    +  ++   + ++D LK ++  N E R  +  +  +II EE
Sbjct:  138 ITRLCHTAFSVAKKVKTKTKIMEGAVSVSYAAVELAQKIF--SNLSMKKILLVGAGETGELAAKHMFAKNARNIVITNRTQSKAEALAEELGTNRVL--PFESYKEHLHEFDIIITAVST------KDYIITEADMHGAMQKRRLKPVIILDLGLPRNADPEIGKLQNMFLKDIDALKHIIDKNLERRSLELPKVHSIIDEE 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_METCA (Glutamyl-tRNA reductase OS=Methylococcus capsulatus GN=hemA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 55/205 (26.83%), Postives = 95/205 (46.34%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            G+ ++ LF    +  K+VRT+T I             LA     +    TA  +++GAG+  +L  +HL       +++ NR+ +R   +  +  G  I  + L + L   A AD++  ST S  P+  K         E+A+   R      +D++VPR++   V  ++   +Y VDDL+  V  N + R   A++A+ II  E
Sbjct:  133 GKILTKLFHRTFAAAKKVRTDTAIGCSPVSVAFAAIRLAQRIFDDLGDLTA--ILVGAGETIELTARHLTENRIGHLIIANRTFDRAHTLANQFGGFAISLEELPKHL---AKADIIVASTGSPLPILGKGSF------ESALRSRRHKPMFIVDLAVPRDIEPEVEQLQDVYLYTVDDLQHTVEENLKTRQEAALQAEEIIDLE 326          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BORPE (Glutamyl-tRNA reductase OS=Bordetella pertussis GN=hemA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 65/216 (30.09%), Postives = 98/216 (45.37%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            G  +  LF+   SV K VR++T I             LA     +   A  R L IGAG+M +L   H  A+    MVV NR+ ER   +    +   +    L+E L   A+ DV+ + TAS  P+        L  VE A    R    + ID++VPR++   V  ++   +Y+VDDL  +V +  + R    ++A+AII         G +HW
Sbjct:  137 GTLLHQLFQRTFSVAKEVRSQTAIGAHSVSMAATAVRLAERVFGQLEDA--RTLFIGAGEMIELCATHFAAQRPRSMVVANRTIERAETLAGRFSAQTMKLADLTERL---AEFDVIVSCTASSLPIL------GLGMVERATRQRRHRPMVMIDLAVPRDIEPEVGRLDDVYLYSVDDLGRLVQSGTDARRAAVVQAEAIIETRVQ----GFMHW 337          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BORPA (Glutamyl-tRNA reductase OS=Bordetella parapertussis GN=hemA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 65/216 (30.09%), Postives = 98/216 (45.37%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            G  +  LF+   SV K VR++T I             LA     +   A  R L IGAG+M +L   H  A+    MVV NR+ ER   +    +   +    L+E L   A+ DV+ + TAS  P+        L  VE A    R    + ID++VPR++   V  ++   +Y+VDDL  +V +  + R    ++A+AII         G +HW
Sbjct:  137 GTLLHQLFQRTFSVAKEVRSQTAIGAHSVSMAAAAVRLAERVFGQLEDA--RTLFIGAGEMIELCATHFAAQRPRSMVVANRTIERAETLAGRFSAQTMKLADLTERL---AEFDVIVSCTASSLPIL------GLGMVERATRQRRHRPMVMIDLAVPRDIEPEVGRLDDVYLYSVDDLGRLVQSGTDARRAAVVQAEAIIETRVQ----GFMHW 337          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BORBR (Glutamyl-tRNA reductase OS=Bordetella bronchiseptica GN=hemA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 65/216 (30.09%), Postives = 98/216 (45.37%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            G  +  LF+   SV K VR++T I             LA     +   A  R L IGAG+M +L   H  A+    MVV NR+ ER   +    +   +    L+E L   A+ DV+ + TAS  P+        L  VE A    R    + ID++VPR++   V  ++   +Y+VDDL  +V +  + R    ++A+AII         G +HW
Sbjct:  137 GTLLHQLFQRTFSVAKEVRSQTAIGAHSVSMAAAAVRLAERVFGQLEDA--RTLFIGAGEMIELCATHFAAQRPRSMVVANRTIERAETLAGRFSAQTMKLADLTERL---AEFDVIVSCTASSLPIL------GLGMVERATRQRRHRPMVMIDLAVPRDIEPEVGRLDDVYLYSVDDLGRLVQSGTDARRAAVVQAEAIIETRVQ----GFMHW 337          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_RALEJ (Glutamyl-tRNA reductase OS=Ralstonia eutropha (strain JMP134) GN=hemA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 67/218 (30.73%), Postives = 103/218 (47.25%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREEL--NGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            G  ++ LF+   +V K VR +T I             LA  ++ ES  +T R+L IGAG+M +L   H  A+   ++VV NR+ ER   + E+L   G+      L E+     + D+V + TAS  P+        L  VE AV   +    + +D++VPR+V   VA ++   +Y VDDL  VV      R     +A+AII     +     +HW
Sbjct:  141 GTYLNQLFQRTFAVAKEVRGQTEIGAHSVSMAAAAVRLA-QRIFESV-STQRVLFIGAGEMIELCATHFAAQKPRQVVVANRTVERGEKLAEQLAEQGLTTQAIRLQELGERLHEFDIVVSCTASSLPII------GLGAVERAVKRRKHRPIMMVDLAVPRDVEPEVARLDDVFLYTVDDLGAVVREGNALRQAAVAQAEAIIESRVQNF----MHW 346          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_CHLPD1.788e-1327.92Glutamyl-tRNA reductase OS=Chlorobium phaeobactero... [more]
HEM1_CAMC51.788e-1329.06Glutamyl-tRNA reductase OS=Campylobacter curvus (s... [more]
HEM11_PYRCJ2.335e-1330.29Glutamyl-tRNA reductase 1 OS=Pyrobaculum calidifon... [more]
HEM1_RALME3.050e-1331.19Glutamyl-tRNA reductase OS=Ralstonia metallidurans... [more]
HEM1_PELLD3.050e-1326.24Glutamyl-tRNA reductase OS=Pelodictyon luteolum (s... [more]
HEM1_METCA3.050e-1326.83Glutamyl-tRNA reductase OS=Methylococcus capsulatu... [more]
HEM1_BORPE3.050e-1330.09Glutamyl-tRNA reductase OS=Bordetella pertussis GN... [more]
HEM1_BORPA3.050e-1330.09Glutamyl-tRNA reductase OS=Bordetella parapertussi... [more]
HEM1_BORBR3.050e-1330.09Glutamyl-tRNA reductase OS=Bordetella bronchisepti... [more]
HEM1_RALEJ3.983e-1330.73Glutamyl-tRNA reductase OS=Ralstonia eutropha (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
back to top