FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BURA4 (Glutamyl-tRNA reductase OS=Burkholderia ambifaria (strain MC40-6) GN=hemA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 59/202 (29.21%), Postives = 92/202 (45.54%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAII 615
            G  ++ LF+   +V K VR  T I             LA       S    R+L IGAG+M +L   H  A+   ++V+ NR+ ER   + E  NG  +   PLS++ +   + D++ + TAS  P+        L  VE AV   R      +D++VPR++   V  ++   +Y VDDL  +V      R     +A+ II
Sbjct:  140 GTYLNQLFQRTFAVAKEVRGTTEIGAQSVSMAAAAVRLAQRIFETVSDQ--RVLFIGAGEMIELCATHFAAQSPRELVIANRTAERGQRLAERFNGRAM---PLSDLPTRMHEFDIIVSCTASTLPII------GLGAVERAVKARRHRPIFMVDLAVPRDIEPEVGKLKDVFLYTVDDLGAIVREGNASRQAAVAQAETII 330          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_AZOSB (Glutamyl-tRNA reductase OS=Azoarcus sp. (strain BH72) GN=hemA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 65/218 (29.82%), Postives = 98/218 (44.95%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELA--LMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            G  +  LF++  +V K VR+ T I             L   + +     H    +L IGAG+M +L   H    G   M V NR+E R  A+   L    +    +++ L      DVV + TAS  P+        L  VE AV   R    + +D++VPR+V   V  ++   +Y VDDL +VV A  E R +  +EA+ II +  +    G +HW
Sbjct:  131 GTLLHKLFQNTFAVAKEVRSTTAIGANIVSMAAAAVHLTGRIFERVSDQH----VLFIGAGEMIELCAAHFAGAGPRSMTVANRTEARAEALAARLGAQTMRLDAIADALP---RFDVVVSCTASPLPIV------GLGMVERAVKVRRHRPIVMVDLAVPRDVEPEVGQLDDVFLYTVDDLAQVVDAGIESRQQAVVEAEGIIDQRVD----GFLHW 331          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VESOH (Glutamyl-tRNA reductase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=hemA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 54/196 (27.55%), Postives = 98/196 (50.00%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            LF+HA S  K+VRT+T I            +L+       S  T  +L+IGAG+M +L  ++L  K  + M++ NR+ E    I        I  K  S ++     AD++ +STA+  P+  K  ++    ++         +DI++PR++   V  ++   +Y +DDL++V+  N  +R ++   AQ II +++
Sbjct:  141 LFQHAFSTAKKVRTDTQIGVSPVSIAYCSVKLSEKIFECLSEQT--VLLIGAGEMIELCAQYLNKKKVSNMIIANRTIENAQKIANLYQAQSIGLKQFSSVIH---KADIIISSTAASVPIIGKGLIESA--LKKRKHKPIFMLDIAIPRDIEPEVGQLDDIYLYTIDDLEQVINDNIGNREKEKNLAQEIIIKQN 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_STAHJ (Glutamyl-tRNA reductase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=hemA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 64/212 (30.19%), Postives = 101/212 (47.64%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQ 639
            Q +   G   + LFK AI+  K+   ET+I            ELA  K         + ++IGAG+M +L + +L+  G   + VVNR+E     +  + +GV   Y  L  + +   +AD+V +ST+S   +  K  ++ +     A     L IDI+VPR++   V   E    Y+VDDLK +V AN  +R    M A  I S+  + +Q
Sbjct:  129 QDIQTTGTIFNHLFKQAITFAKKAHNETDIADNAVSVSYAAVELA--KKVFGKLKGKQTIIIGAGEMSELSLLNLLGSGIDDITVVNRTETNAYKLATK-HGVN--YNTLESLPTLLTNADIVISSTSSPDFIVTKSMIESVNLKRKASS--LLLIDIAVPRDIEPNVNISENIFSYDVDDLKGLVDANLRER---QMAADFIASQIPDEVQ 330          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_STACT (Glutamyl-tRNA reductase OS=Staphylococcus carnosus (strain TM300) GN=hemA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 58/205 (28.29%), Postives = 101/205 (49.27%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLP--ESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            G   + LFK AI+  KR   ET+I            ELA       +S HA    +++GAG+M +L + +L+  G   + VVNR++ER   + E+    +  Y  LS +     +AD+V +ST+++  +  ++ + ++  ++       + IDI+VPR++   +        Y++DDLK +V AN  +R   A +    I  E N
Sbjct:  135 GTIFNHLFKQAITFAKRAHHETDIADNAVSVSYAAVELAKKVFGNLKSKHA----VIVGAGEMSELSLLNLLGAGIDNITVVNRTKERAQQLAEK---HQTQYADLSNLNELLVNADIVISSTSAQNYVITQEMMNNV--LDQRRHEPMVLIDIAVPRDIDPAIELDMNVFSYDIDDLKGLVDANLRERQAAADQIAEQIPAEIN 330          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_HERA2 (Glutamyl-tRNA reductase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=hemA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 53/201 (26.37%), Postives = 103/201 (51.24%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            G  +  L + A++ GK VRTET +             LA   L  ++ +   +++IGAG+ G+L +KH + +  + + V++R+ ER A + E     ++  KP+SE+ +    +DVV + T+S   +   +  Q L   +A      + +D++VPR++   V  +    +Y+VDD++ +   N+  +  +   A+AI+  E
Sbjct:  132 GTTMHRLIQAALTTGKLVRTETQLAHAQLSVVSVGLSLARQHLDLTNRS---VVIIGAGRTGELALKHYL-EYTSNITVLSRTFERAARLAEHH---KVAAKPISELAAVLQASDVVISCTSSPELMLDFEQAQLL---QAQRQRQWVLLDLAVPRDIDRHVGALPEVWLYDVDDMQAICERNRASKAAEVAGAEAIVERE 322          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CLONN (Glutamyl-tRNA reductase OS=Clostridium novyi (strain NT) GN=hemA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 55/205 (26.83%), Postives = 104/205 (50.73%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATAR---MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEII-YKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFI-DISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            ++ LF+ AI+  K++++E  I                +KL E +  T +     +IGAG MG+L +KHL+ +   ++ V NR+   V  + +E   +++I Y+   E+L    + D++ T+TA+   +  K+ +Q++           L+I D+++PR+V     D+E   +Y+VDD K +  +NK  R   ++ A+  I    N
Sbjct:  135 LNKLFREAITSAKKIKSELKISETPISMVYIA-----IKLLEKNIGTLKGKKACIIGAGDMGRLALKHLINEELEEIFVANRTYNNVIDLLKEFPKIKLIDYEKKYEILD---NVDILITATAAPHLIIKKEQLQNIKQ--------ELYIMDLALPRDVEKSAGDIENIHLYDVDDFKNISDSNKIKREELSLIAKDSIDSYVN 323          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_NOCFA (Glutamyl-tRNA reductase OS=Nocardia farcinica GN=hemA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 66/208 (31.73%), Postives = 98/208 (47.12%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREEL--NGVEIIYKPLSEMLSCAADADVVFTST-ASEAPLFLKD---HVQDLPPVEAAVGGLRL-FIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GR +  L +HA+ VGKRV +ET I            + A   L + +  TA  +V+GAG MG L + HL   G  +++VVNR+ ER   + E     GVE     L  +    + ADVV + T A  A + L D    + D    E   G   L F D+ +PR+V   VA +    V +++ L+   AA           A++I++EE
Sbjct:  135 GRTLHELAQHALRVGKRVHSETGIDRAGASVVSVALDRAAQVLGDLAGRTA--VVVGAGAMGGLSVAHLARAGIGRIIVVNRTIERARRLAETAASYGVESSALELDRLHEAMSAADVVLSCTGAVGAVVTLADTHRALADRDRAEFPAGDRPLVFCDLGLPRDVEPAVAGLPGVAVIDIESLQRDPAAGA--AADDTAAARSIVAEE 338          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_AZOSE (Glutamyl-tRNA reductase OS=Azoarcus sp. (strain EbN1) GN=hemA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 61/216 (28.24%), Postives = 97/216 (44.91%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            G  +  LF++  +V K VR+ T I             L+       S    R+L IGAG+M +L   +       ++ V NR+E R   +        +    + EML      DVV + TAS  P+        L  VE A+   R    + +D++VPR++ + V +++   +Y VDDL ++V A  E R +  +EA+ II    N    G +HW
Sbjct:  131 GTLLHKLFQNTFAVAKEVRSTTAIGANIVSMAAAALHLSERIFERMSDQ--RVLFIGAGEMIELCAAYFAGACPKRIAVANRTEARAQLVAHRFGAEVMRLDVVGEMLP---HFDVVVSCTASPLPIV------GLGMVERAIKARRHRPIVMVDLAVPRDIEAEVGELDDVFLYTVDDLAQIVDAGLESRQQAVLEAEEIIDSRVN----GFLHW 331          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM12_PYRCJ (Glutamyl-tRNA reductase 2 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=hemA2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 61/196 (31.12%), Postives = 102/196 (52.04%), Query Frame = 1
Query:   46 KHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHAT-ARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLS--EMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            + A+ VGKRVRTET I             LA+M +        A + V+GAG +G  +   L A+G  ++VV+NR+ E+   +   + G     +PL+  E+  C A+ DVVF+S  +  P+     ++ +PP EA V   ++ +D+ VP +V   V ++  A V  ++DL+E+      +R  +  +A AI+ EE
Sbjct:  132 ERAVRVGKRVRTETGISRGPRGLG----SLAVMYVSRMLDLREASVAVLGAGAVGAGLAMELAARGVKRLVVLNRTYEKAVEVANRVGGEA---RPLTEEEVEKCLAECDVVFSSVHTLQPV-----IKRVPP-EARV---KVIVDLGVPSSV---VPNLPVA-VVKIEDLRELAEEYNRERAGEVEKAWAIVDEE 307          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_BURA45.202e-1329.21Glutamyl-tRNA reductase OS=Burkholderia ambifaria ... [more]
HEM1_AZOSB5.202e-1329.82Glutamyl-tRNA reductase OS=Azoarcus sp. (strain BH... [more]
HEM1_VESOH6.794e-1327.55Glutamyl-tRNA reductase OS=Vesicomyosocius okutani... [more]
HEM1_STAHJ6.794e-1330.19Glutamyl-tRNA reductase OS=Staphylococcus haemolyt... [more]
HEM1_STACT6.794e-1328.29Glutamyl-tRNA reductase OS=Staphylococcus carnosus... [more]
HEM1_HERA26.794e-1326.37Glutamyl-tRNA reductase OS=Herpetosiphon aurantiac... [more]
HEM1_CLONN6.794e-1326.83Glutamyl-tRNA reductase OS=Clostridium novyi (stra... [more]
HEM1_NOCFA1.159e-1231.73Glutamyl-tRNA reductase OS=Nocardia farcinica GN=h... [more]
HEM1_AZOSE1.159e-1228.24Glutamyl-tRNA reductase OS=Azoarcus sp. (strain Eb... [more]
HEM12_PYRCJ1.159e-1231.12Glutamyl-tRNA reductase 2 OS=Pyrobaculum calidifon... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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