FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CAMJR (Glutamyl-tRNA reductase OS=Campylobacter jejuni (strain RM1221) GN=hemA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 60/204 (29.41%), Postives = 98/204 (48.04%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARM-LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            G ++S     A     +VR ET I             +A+ K  E +  T +  +VIGAG+MG+LV KHL+A G  K++++NR  ++   + E L GV   Y  L  +       +  F++T +   +     +++L          R F DI+VPR++   + + E   V+ VDDL+ VV  N   R ++A  A  II  E++
Sbjct:  133 GVHLSRAVHSAFKCAAKVRNETQISKNSISVA----SVAVAKAKELADLTQKKAVVIGAGEMGELVAKHLIAAG-AKVIILNRDLQKAKDLCERL-GVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEEL-------SYKRYFFDIAVPRDID--INENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETS 321          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CHLT3 (Glutamyl-tRNA reductase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=hemA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 50/188 (26.60%), Postives = 87/188 (46.28%), Query Frame = 1
Query:   61 VGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            +  RVR++T +            EL      + S  T  +L++GAG   KL  K+L+ K      + NR+ E+   + +EL   +I+  PL EM     + D+V T+      +  K+HV     ++       L +D+ +PRNV   V  V    + ++DDLK ++ +N E R  +  + +  I +E
Sbjct:  148 LANRVRSKTKLTAGAVSVSYAAVELTQKIYSDVS--TKNILLVGAGDTAKLAAKNLLDKRVRDFYITNRTYEKAELLAQELGTGKIL--PLEEMTERLHEFDIVVTAVGGNDHIIKKEHVA--AAMQKRHRDPILILDLGLPRNVAPEVGQVNNVFLKDIDDLKMIIDSNLEKRRAEIPKVKHFIQKE 329          

HSP 2 Score: 20.4014 bits (41), Expect = 1.982e-11
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = 3
Query:  630 QFAAWRDSLETVPTI 674
            ++A W  SLE  PTI
Sbjct:  332 EYARWYFSLEVKPTI 346          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_METB6 (Glutamyl-tRNA reductase OS=Methanoregula boonei (strain 6A8) GN=hemA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 59/198 (29.80%), Postives = 96/198 (48.48%), Query Frame = 1
Query:   52 AISVGKRVRTETNIXXXXXXXXXXXXELALMKLP--ESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLF----LKDHVQD-LPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            A+ VG  VR  T I             LA  +L   E  H    +LV+G+G+MG LV + L AK  T M V NR+  R   + E++ GV +    ++E+      +DVV + T++  P+     LK+ ++D   PVE     L + +DI+ PR+V      ++  R++ +DDL++V       R  +A  A   + +E
Sbjct:  134 AVHVGVGVRRTTKINRGAVSVGSAAVLLAESELGTLEGRH----ILVVGSGEMGLLVAQALAAKHLTAMYVANRTFGRAVILAEKIGGVAV---RMNELYHYITLSDVVISCTSAPHPVIHKTALKEAMRDRCWPVEGHPRPL-ILVDIAQPRDVEEGAGAIDGVRLFTIDDLRQVNEQTMSTRRAEAERAAEYVDDE 323          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CAMJJ (Glutamyl-tRNA reductase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=hemA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 60/204 (29.41%), Postives = 97/204 (47.55%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARM-LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            G ++S     A     +VR ET I             +A+ K  E +  T +  +VIGAG+MG+L  KHL+A G  K++++NR  ++   + E L GV   Y  L  +       +  F++T +   +     V++L          R F DI+VPR++   + + E   V+ VDDL+ VV  N   R ++A  A  II  E++
Sbjct:  133 GVHLSRAVHSAFKCAAKVRNETQISKNSISVA----SVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAG-AKVIILNRDLQKAKDLCERL-GVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLVEEL-------SYKRYFFDIAVPRDID--INENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETS 321          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CAMJE (Glutamyl-tRNA reductase OS=Campylobacter jejuni GN=hemA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 59/204 (28.92%), Postives = 97/204 (47.55%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARM-LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            G ++S     A     +VR ET I             +A+ K  E +  T +  +VIGAG+MG+L  KHL+A G  K++++NR  ++   + E L GV   Y  L  +       +  F++T +   +     +++L          R F DI+VPR++   + + E   V+ VDDL+ VV  N   R ++A  A  II  E++
Sbjct:  133 GVHLSRAVHSAFKCAAKVRNETQISKNSISVA----SVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAG-AKVIILNRDLQKAKDLCERL-GVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEEL-------SYKRYFFDIAVPRDID--INENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETS 321          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM11_NOCSJ (Glutamyl-tRNA reductase 1 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=hemA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 55/186 (29.57%), Postives = 85/186 (45.70%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL-FIDISVPRNVGSCVADVETARVYNVDDLKE 555
            GQ +   G  ++ LF+ A+ VGKR R ET I            + +   + E S    R+LV+GAG M  L    + A+G   + VVNR+      + EE          L+E+ +  A ADVV + T +   L  +D V       A V G  L  +D+++P +V   VAD+    +  + DL +
Sbjct:  128 GQEIGTVGPALNVLFQQALRVGKRARAETGIDRAAPSLVSAALDRSRATVGELSGK--RVLVVGAGSMAGLATSTVAARGTASVTVVNRTSGNADRLAEEYGARS---ATLAELAAELAVADVVISCTGATGTLITRDMV-----AAATVDGRELSILDLALPHDVDPTVADLPGVSLVGLTDLAD 303          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_THENV (Glutamyl-tRNA reductase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=hemA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 57/199 (28.64%), Postives = 99/199 (49.75%), Query Frame = 1
Query:   46 KHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLS--EMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSL 636
            + A+ VGKRVRTET I             + + +L +   A A   V+GAG +G  +   L ++G  K+ ++NR+ E+   +  +  G     +PL+  E+  C  + DVVF+S  S       ++V D  P  A+V   ++ +D+ VP+     VA     +V  ++DL++V      +R  +  +A+AI+ EE  +L
Sbjct:  132 ERAVRVGKRVRTETAISRGPRGLGSLSI-IYVSRLLDLRQAKAA--VLGAGAVGSGLAMELASRGVGKLYILNRTFEKAREVAAKTGGEA---RPLTREEVERCLRECDVVFSSVHS------MEYVIDRVPEGASV---KIVVDLGVPQT----VAPGLPVKVVRIEDLRQVAEQYNAERAAEVAKAEAIVEEELAAL 311          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALTO (Glutamyl-tRNA reductase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=hemA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 50/181 (27.62%), Postives = 83/181 (45.86%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVA 564
            GR +  L + A+ VGKR  +ET I             LA  +L  S  A    LV+GAG MG L +  L   G   + V NR  +R   + E      +   P++++ +  +  D+V  +TA+   +  +  V           G  + +D++VPR+V   VAD+   +V ++D +  +VA
Sbjct:  135 GRLLHELMQQALRVGKRAHSETGIDRAGQSVVTAALGLAT-ELLHSDLACRPALVVGAGAMGSLGVATLARLGAGPVSVTNRGVDRAIRLAESYGATAV---PIADLTATLSTVDIVVAATAAPEAVLTRAVVTQALAGRNPSRGPLVLLDLAVPRDVEPGVADLPGVQVIDIDRMAALVA 311          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_POLNA (Glutamyl-tRNA reductase OS=Polaromonas naphthalenivorans (strain CJ2) GN=hemA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 58/216 (26.85%), Postives = 92/216 (42.59%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            G  +  LF+ + +V K VRT T I             LA     +      ++L +GAG+M  L   H  AK    M + NRS +R   +     G E++   L ++     + D V + TAS  P+        L  VE A+   +      +D++VPR++   V ++    +Y VDDL  VV   ++ R     EA+ II     +     +HW
Sbjct:  134 GTTLHQLFQRSFAVAKEVRTSTEIGAHSISMAAAAVRLAGQLFEDLGDI--KVLFVGAGEMIDLAATHFAAKNPKAMAIANRSLDRGEKLASRF-GAEVMR--LGDLPGRLHEFDAVISCTASTLPII------GLGAVERALKRRKHRPMFMVDLAVPRDIEPEVKELSDIYLYTVDDLAHVVQTGRDSRQAAVAEAEVIIDAGVQNF----MHW 334          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_MYCTU (Glutamyl-tRNA reductase OS=Mycobacterium tuberculosis GN=hemA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 60/193 (31.09%), Postives = 87/193 (45.08%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREEL--NGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR--------LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAAN 570
            GR +  L + A+SVGKRV +ET I             +A  KL   +  TA  +VIGAG MG L   HL   G   + V+NRS  R   +   +  +GV      L  + +  ADADVV + T +  P      V  L  V  A+   R        +  D+ +PR+V   VA +    V +VD ++   +A+
Sbjct:  135 GRVLHELAQRALSVGKRVHSETAIDAAGASVVSVALGMAERKLGSLAGTTA--VVIGAGAMGALSAVHLTRAGVGHIQVLNRSLSRAQRLARRIRESGVPAEALALDRLANVLADADVVVSCTGAVRP------VVSLADVHHALAAARRDEATRPLVICDLGMPRDVDPAVARLPCVWVVDVDSVQHEPSAH 319          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_CAMJR1.281e-1129.41Glutamyl-tRNA reductase OS=Campylobacter jejuni (s... [more]
HEM1_CHLT31.982e-1126.60Glutamyl-tRNA reductase OS=Chloroherpeton thalassi... [more]
HEM1_METB62.186e-1129.80Glutamyl-tRNA reductase OS=Methanoregula boonei (s... [more]
HEM1_CAMJJ2.855e-1129.41Glutamyl-tRNA reductase OS=Campylobacter jejuni su... [more]
HEM1_CAMJE3.728e-1128.92Glutamyl-tRNA reductase OS=Campylobacter jejuni GN... [more]
HEM11_NOCSJ3.728e-1129.57Glutamyl-tRNA reductase 1 OS=Nocardioides sp. (str... [more]
HEM1_THENV4.869e-1128.64Glutamyl-tRNA reductase OS=Thermoproteus neutrophi... [more]
HEM1_SALTO4.869e-1127.62Glutamyl-tRNA reductase OS=Salinispora tropica (st... [more]
HEM1_POLNA4.869e-1126.85Glutamyl-tRNA reductase OS=Polaromonas naphthaleni... [more]
HEM1_MYCTU6.359e-1131.09Glutamyl-tRNA reductase OS=Mycobacterium tuberculo... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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