FC930965
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CAMJR (Glutamyl-tRNA reductase OS=Campylobacter jejuni (strain RM1221) GN=hemA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11 Identity = 60/204 (29.41%), Postives = 98/204 (48.04%), Query Frame = 1 Query: 22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARM-LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630 G ++S A +VR ET I +A+ K E + T + +VIGAG+MG+LV KHL+A G K++++NR ++ + E L GV Y L + + F++T + + +++L R F DI+VPR++ + + E V+ VDDL+ VV N R ++A A II E++ Sbjct: 133 GVHLSRAVHSAFKCAAKVRNETQISKNSISVA----SVAVAKAKELADLTQKKAVVIGAGEMGELVAKHLIAAG-AKVIILNRDLQKAKDLCERL-GVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEEL-------SYKRYFFDIAVPRDID--INENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETS 321
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CHLT3 (Glutamyl-tRNA reductase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=hemA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11 Identity = 50/188 (26.60%), Postives = 87/188 (46.28%), Query Frame = 1 Query: 61 VGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624 + RVR++T + EL + S T +L++GAG KL K+L+ K + NR+ E+ + +EL +I+ PL EM + D+V T+ + K+HV ++ L +D+ +PRNV V V + ++DDLK ++ +N E R + + + I +E Sbjct: 148 LANRVRSKTKLTAGAVSVSYAAVELTQKIYSDVS--TKNILLVGAGDTAKLAAKNLLDKRVRDFYITNRTYEKAELLAQELGTGKIL--PLEEMTERLHEFDIVVTAVGGNDHIIKKEHVA--AAMQKRHRDPILILDLGLPRNVAPEVGQVNNVFLKDIDDLKMIIDSNLEKRRAEIPKVKHFIQKE 329 HSP 2 Score: 20.4014 bits (41), Expect = 1.982e-11 Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = 3 Query: 630 QFAAWRDSLETVPTI 674 ++A W SLE PTI Sbjct: 332 EYARWYFSLEVKPTI 346
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_METB6 (Glutamyl-tRNA reductase OS=Methanoregula boonei (strain 6A8) GN=hemA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11 Identity = 59/198 (29.80%), Postives = 96/198 (48.48%), Query Frame = 1 Query: 52 AISVGKRVRTETNIXXXXXXXXXXXXELALMKLP--ESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLF----LKDHVQD-LPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624 A+ VG VR T I LA +L E H +LV+G+G+MG LV + L AK T M V NR+ R + E++ GV + ++E+ +DVV + T++ P+ LK+ ++D PVE L + +DI+ PR+V ++ R++ +DDL++V R +A A + +E Sbjct: 134 AVHVGVGVRRTTKINRGAVSVGSAAVLLAESELGTLEGRH----ILVVGSGEMGLLVAQALAAKHLTAMYVANRTFGRAVILAEKIGGVAV---RMNELYHYITLSDVVISCTSAPHPVIHKTALKEAMRDRCWPVEGHPRPL-ILVDIAQPRDVEEGAGAIDGVRLFTIDDLRQVNEQTMSTRRAEAERAAEYVDDE 323
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CAMJJ (Glutamyl-tRNA reductase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=hemA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11 Identity = 60/204 (29.41%), Postives = 97/204 (47.55%), Query Frame = 1 Query: 22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARM-LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630 G ++S A +VR ET I +A+ K E + T + +VIGAG+MG+L KHL+A G K++++NR ++ + E L GV Y L + + F++T + + V++L R F DI+VPR++ + + E V+ VDDL+ VV N R ++A A II E++ Sbjct: 133 GVHLSRAVHSAFKCAAKVRNETQISKNSISVA----SVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAG-AKVIILNRDLQKAKDLCERL-GVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLVEEL-------SYKRYFFDIAVPRDID--INENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETS 321
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_CAMJE (Glutamyl-tRNA reductase OS=Campylobacter jejuni GN=hemA PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11 Identity = 59/204 (28.92%), Postives = 97/204 (47.55%), Query Frame = 1 Query: 22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARM-LVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630 G ++S A +VR ET I +A+ K E + T + +VIGAG+MG+L KHL+A G K++++NR ++ + E L GV Y L + + F++T + + +++L R F DI+VPR++ + + E V+ VDDL+ VV N R ++A A II E++ Sbjct: 133 GVHLSRAVHSAFKCAAKVRNETQISKNSISVA----SVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAG-AKVIILNRDLQKAKDLCERL-GVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEEL-------SYKRYFFDIAVPRDID--INENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETS 321
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM11_NOCSJ (Glutamyl-tRNA reductase 1 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=hemA1 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11 Identity = 55/186 (29.57%), Postives = 85/186 (45.70%), Query Frame = 1 Query: 1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRL-FIDISVPRNVGSCVADVETARVYNVDDLKE 555 GQ + G ++ LF+ A+ VGKR R ET I + + + E S R+LV+GAG M L + A+G + VVNR+ + EE L+E+ + A ADVV + T + L +D V A V G L +D+++P +V VAD+ + + DL + Sbjct: 128 GQEIGTVGPALNVLFQQALRVGKRARAETGIDRAAPSLVSAALDRSRATVGELSGK--RVLVVGAGSMAGLATSTVAARGTASVTVVNRTSGNADRLAEEYGARS---ATLAELAAELAVADVVISCTGATGTLITRDMV-----AAATVDGRELSILDLALPHDVDPTVADLPGVSLVGLTDLAD 303
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_THENV (Glutamyl-tRNA reductase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=hemA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11 Identity = 57/199 (28.64%), Postives = 99/199 (49.75%), Query Frame = 1 Query: 46 KHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLS--EMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSL 636 + A+ VGKRVRTET I + + +L + A A V+GAG +G + L ++G K+ ++NR+ E+ + + G +PL+ E+ C + DVVF+S S ++V D P A+V ++ +D+ VP+ VA +V ++DL++V +R + +A+AI+ EE +L Sbjct: 132 ERAVRVGKRVRTETAISRGPRGLGSLSI-IYVSRLLDLRQAKAA--VLGAGAVGSGLAMELASRGVGKLYILNRTFEKAREVAAKTGGEA---RPLTREEVERCLRECDVVFSSVHS------MEYVIDRVPEGASV---KIVVDLGVPQT----VAPGLPVKVVRIEDLRQVAEQYNAERAAEVAKAEAIVEEELAAL 311
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALTO (Glutamyl-tRNA reductase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=hemA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11 Identity = 50/181 (27.62%), Postives = 83/181 (45.86%), Query Frame = 1 Query: 22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVA 564 GR + L + A+ VGKR +ET I LA +L S A LV+GAG MG L + L G + V NR +R + E + P++++ + + D+V +TA+ + + V G + +D++VPR+V VAD+ +V ++D + +VA Sbjct: 135 GRLLHELMQQALRVGKRAHSETGIDRAGQSVVTAALGLAT-ELLHSDLACRPALVVGAGAMGSLGVATLARLGAGPVSVTNRGVDRAIRLAESYGATAV---PIADLTATLSTVDIVVAATAAPEAVLTRAVVTQALAGRNPSRGPLVLLDLAVPRDVEPGVADLPGVQVIDIDRMAALVA 311
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_POLNA (Glutamyl-tRNA reductase OS=Polaromonas naphthalenivorans (strain CJ2) GN=hemA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11 Identity = 58/216 (26.85%), Postives = 92/216 (42.59%), Query Frame = 1 Query: 22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657 G + LF+ + +V K VRT T I LA + ++L +GAG+M L H AK M + NRS +R + G E++ L ++ + D V + TAS P+ L VE A+ + +D++VPR++ V ++ +Y VDDL VV ++ R EA+ II + +HW Sbjct: 134 GTTLHQLFQRSFAVAKEVRTSTEIGAHSISMAAAAVRLAGQLFEDLGDI--KVLFVGAGEMIDLAATHFAAKNPKAMAIANRSLDRGEKLASRF-GAEVMR--LGDLPGRLHEFDAVISCTASTLPII------GLGAVERALKRRKHRPMFMVDLAVPRDIEPEVKELSDIYLYTVDDLAHVVQTGRDSRQAAVAEAEVIIDAGVQNF----MHW 334
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_MYCTU (Glutamyl-tRNA reductase OS=Mycobacterium tuberculosis GN=hemA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11 Identity = 60/193 (31.09%), Postives = 87/193 (45.08%), Query Frame = 1 Query: 22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREEL--NGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR--------LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAAN 570 GR + L + A+SVGKRV +ET I +A KL + TA +VIGAG MG L HL G + V+NRS R + + +GV L + + ADADVV + T + P V L V A+ R + D+ +PR+V VA + V +VD ++ +A+ Sbjct: 135 GRVLHELAQRALSVGKRVHSETAIDAAGASVVSVALGMAERKLGSLAGTTA--VVIGAGAMGALSAVHLTRAGVGHIQVLNRSLSRAQRLARRIRESGVPAEALALDRLANVLADADVVVSCTGAVRP------VVSLADVHHALAAARRDEATRPLVICDLGMPRDVDPAVARLPCVWVVDVDSVQHEPSAH 319 The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 465
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bpback to top |