FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_MYCTA (Glutamyl-tRNA reductase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=hemA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 60/193 (31.09%), Postives = 87/193 (45.08%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREEL--NGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR--------LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAAN 570
            GR +  L + A+SVGKRV +ET I             +A  KL   +  TA  +VIGAG MG L   HL   G   + V+NRS  R   +   +  +GV      L  + +  ADADVV + T +  P      V  L  V  A+   R        +  D+ +PR+V   VA +    V +VD ++   +A+
Sbjct:  135 GRVLHELAQRALSVGKRVHSETAIDAAGASVVSVALGMAERKLGSLAGTTA--VVIGAGAMGALSAVHLTRAGVGHIQVLNRSLSRAQRLARRIRESGVPAEALALDRLANVLADADVVVSCTGAVRP------VVSLADVHHALAAARRDEATRPLVICDLGMPRDVDPAVARLPCVWVVDVDSVQHEPSAH 319          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_MYCBT (Glutamyl-tRNA reductase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=hemA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 60/193 (31.09%), Postives = 87/193 (45.08%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREEL--NGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR--------LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAAN 570
            GR +  L + A+SVGKRV +ET I             +A  KL   +  TA  +VIGAG MG L   HL   G   + V+NRS  R   +   +  +GV      L  + +  ADADVV + T +  P      V  L  V  A+   R        +  D+ +PR+V   VA +    V +VD ++   +A+
Sbjct:  135 GRVLHELAQRALSVGKRVHSETAIDAAGASVVSVALGMAERKLGSLAGTTA--VVIGAGAMGALSAVHLTRAGVGHIQVLNRSLSRAQRLARRIRESGVPAEALALDRLANVLADADVVVSCTGAVRP------VVSLADVHHALAAARRDEATRPLVICDLGMPRDVDPAVARLPCVWVVDVDSVQHEPSAH 319          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_MYCBP (Glutamyl-tRNA reductase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=hemA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 60/193 (31.09%), Postives = 87/193 (45.08%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREEL--NGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR--------LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAAN 570
            GR +  L + A+SVGKRV +ET I             +A  KL   +  TA  +VIGAG MG L   HL   G   + V+NRS  R   +   +  +GV      L  + +  ADADVV + T +  P      V  L  V  A+   R        +  D+ +PR+V   VA +    V +VD ++   +A+
Sbjct:  135 GRVLHELAQRALSVGKRVHSETAIDAAGASVVSVALGMAERKLGSLAGTTA--VVIGAGAMGALSAVHLTRAGVGHIQVLNRSLSRAQRLARRIRESGVPAEALALDRLANVLADADVVVSCTGAVRP------VVSLADVHHALAAARRDEATRPLVICDLGMPRDVDPAVARLPCVWVVDVDSVQHEPSAH 319          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_MYCBO (Glutamyl-tRNA reductase OS=Mycobacterium bovis GN=hemA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 60/193 (31.09%), Postives = 87/193 (45.08%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREEL--NGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR--------LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAAN 570
            GR +  L + A+SVGKRV +ET I             +A  KL   +  TA  +VIGAG MG L   HL   G   + V+NRS  R   +   +  +GV      L  + +  ADADVV + T +  P      V  L  V  A+   R        +  D+ +PR+V   VA +    V +VD ++   +A+
Sbjct:  135 GRVLHELAQRALSVGKRVHSETAIDAAGASVVSVALGMAERKLGSLAGTTA--VVIGAGAMGALSAVHLTRAGVGHIQVLNRSLSRAQRLARRIRESGVPAEALALDRLANVLADADVVVSCTGAVRP------VVSLADVHHALAAARRDEATRPLVICDLGMPRDVDPAVARLPCVWVVDVDSVQHEPSAH 319          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_VEREI (Glutamyl-tRNA reductase OS=Verminephrobacter eiseniae (strain EF01-2) GN=hemA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 60/216 (27.78%), Postives = 89/216 (41.20%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQLGGIHW 657
            G  ++ LF+ + +V K VR+ T I             LA     + S    R+L +GAG M  L   H  AK    + + NR+ ER   +        +    L E L    + D V + TAS  P+        L  VE A+   R      +D++VPR++   V  +    +Y VDDL  VV   +  R     +A+AII     S     +HW
Sbjct:  136 GSTLNQLFQRSFAVAKEVRSSTEIGAHSISMAAAAVRLAGQLFEDLSQI--RVLFVGAGAMIALCATHFAAKNPLGLALANRTLERGEQLAARFGATVLRLADLPERLH---EFDAVISCTASSLPII------GLGAVERALKKRRHRPMFMVDLAVPRDIEPEVKALGDVYLYTVDDLASVVQTGQASRQAAVAQAEAIIDAGVQSF----MHW 336          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_MYCTA6.359e-1131.09Glutamyl-tRNA reductase OS=Mycobacterium tuberculo... [more]
HEM1_MYCBT6.359e-1131.09Glutamyl-tRNA reductase OS=Mycobacterium bovis (st... [more]
HEM1_MYCBP6.359e-1131.09Glutamyl-tRNA reductase OS=Mycobacterium bovis (st... [more]
HEM1_MYCBO6.359e-1131.09Glutamyl-tRNA reductase OS=Mycobacterium bovis GN=... [more]
HEM1_VEREI8.306e-1127.78Glutamyl-tRNA reductase OS=Verminephrobacter eisen... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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