FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_MYXXD (Glutamyl-tRNA reductase OS=Myxococcus xanthus (strain DK 1622) GN=hemA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.246e-23
Identity = 71/208 (34.13%), Postives = 106/208 (50.96%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQG       +      A S  KRVRTET I            +LA       +  T  +LV+GAG+MG+L  +HL   G +K+ V NR+  R  A+  E+ G     +P  E+L   A ADVV  STAS+APLF +D+V  L       G     +D++VPR++   V  ++    Y+VDD+++ VA N   R  +A +A  ++++E
Sbjct:  123 GQGAGAVRGELMRACAAAFSCAKRVRTETAIGRAATSMAAAAVQLASKVFDGLAGKT--VLVVGAGEMGELAARHLKQAGASKLYVTNRTLSRAEALAAEVGGQA---RPFEELLGLVAAADVVVCSTASQAPLFTRDNVGALG--RGRRGRPLFMVDLAVPRDIDPAVGTLDWVHAYDVDDIQKFVADNAAARAEEAQKAGVLVAQE 323          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_GEOKA (Glutamyl-tRNA reductase OS=Geobacillus kaustophilus GN=hemA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.545e-23
Identity = 71/202 (35.15%), Postives = 109/202 (53.96%), Query Frame = 1
Query:   22 GRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            G   + LFK A++  KR  +ET I            ELA  K      A   +L+IGAGKMG L  ++L   G  K+ VVNR+ E+   + ++  G     KPL E+     +AD+V +ST ++  +  K+ V    P+E    G  LF +DI+VPR++   +AD+ET  +Y++DDL++VVAAN  +R + A   + +I  E
Sbjct:  135 GTIFNHLFKQAVTFAKRAHSETGIGAHAVSVSYAAVELA--KKIFGRLAGKHVLIIGAGKMGTLAAQNLYGSGVGKVTVVNRTLEKAKQLAKQFAGEA---KPLGELSCALLEADIVISSTGAKGYILTKEMVA---PLEKMRKGRPLFMVDIAVPRDLDPALADLETVFLYDIDDLQDVVAANLAERQKAAARIETMIEAE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SYNR3 (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain RCC307) GN=hemA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.071e-23
Identity = 68/216 (31.48%), Postives = 113/216 (52.31%), Query Frame = 1
Query:    1 GQGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPES-------SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GQ     G  ++ L   A+S GKRVR+ETN+            ELA +K+ +        S +  ++ V+GAG+M +L+++HL +KG   + VVNR+  +   + ++   + I    L ++ +  A   ++FTST ++ P+       D   ++A     RL  +DI VPRN+ S  ADV     Y+VDDL+EVV  N   R + A +A+ ++ E+
Sbjct:  128 GQDHKSIGPILNRLLNQAVSTGKRVRSETNLGSGAVSISSAAVELAQLKVGQEQGVDDLVSLSQEKVAVVGAGRMARLLLQHLQSKGARSITVVNRTVAKAEVLAKDFPDLVITCCGLDQLDAQLASNTLLFTSTGADEPII------DRQRLDAITRQARLMLVDIGVPRNISSDAADVSGTLSYDVDDLQEVVERNVAARQQLAQQAEVLLDED 337          

HSP 2 Score: 22.3274 bits (46), Expect = 8.071e-23
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 3
Query:  633 FAAWRDSLETVPTI 674
            F  W D LE VPTI
Sbjct:  341 FLDWWDGLEAVPTI 354          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHEON (Glutamyl-tRNA reductase OS=Shewanella oneidensis GN=hemA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.459e-23
Identity = 73/200 (36.50%), Postives = 107/200 (53.50%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            I  LF++  SV K+VRTET I             +A  K   SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER  ++ EE N   I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  NK  R   A +A+ I  E+S+
Sbjct:  134 IDRLFQNTFSVAKKVRTETEIGAAAVSVAFAAVSMA--KHIFSSLSTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQSMCEEFNATAITLAQIPDFLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNKASRKEAAEQAELITEEQSH 326          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_NATTJ (Glutamyl-tRNA reductase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=hemA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.459e-23
Identity = 70/196 (35.71%), Postives = 104/196 (53.06%), Query Frame = 1
Query:   37 GLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            GL++ A+  GKRV  ET I            ELA       S    R L+IGAGKM +L  +HL + G   ++V+NR+ ER   + ++  G+   Y  LSE L+   + D+V TST   AP F+    Q    +++        IDI+VPR+V   V + + A +Y +DDL+ VV +N ++R  +A  A+ IISEE
Sbjct:  142 GLYQQALRTGKRVHRETGINDNAASVSYASVELATKIF--GSLQNRRALIIGAGKMSELAARHLYSNGVKDVIVINRTIERAKNLADKFGGLYASYDQLSEWLN---EIDIVITSTG--APHFVIKEEQIKRAMKSRKYSPMFLIDIAVPRDVEPSVNNQDNAYLYTIDDLEAVVESNMQERQEEARNAELIISEE 330          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHESR (Glutamyl-tRNA reductase OS=Shewanella sp. (strain MR-7) GN=hemA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 73/199 (36.68%), Postives = 106/199 (53.27%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            I  LF++  SV K+VRTET I             +A  K   SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER  ++ EE N   I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  NK  R   A +A+ I  E+S
Sbjct:  134 IDRLFQNTFSVAKKVRTETEIGAAAVSVAFAAVSMA--KHIFSSLSTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQSMCEEFNATAITLAQIPDFLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNKASRKEAAEQAELITEEQS 325          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHESA (Glutamyl-tRNA reductase OS=Shewanella sp. (strain ANA-3) GN=hemA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 73/199 (36.68%), Postives = 106/199 (53.27%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            I  LF++  SV K+VRTET I             +A  K   SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER  ++ EE N   I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  NK  R   A +A+ I  E+S
Sbjct:  134 IDRLFQNTFSVAKKVRTETEIGAAAVSVAFAAVSMA--KHIFSSLSTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQSMCEEFNATAITLAQIPDFLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNKASRKEAAEQAELITEEQS 325          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SHESM (Glutamyl-tRNA reductase OS=Shewanella sp. (strain MR-4) GN=hemA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.613e-22
Identity = 72/200 (36.00%), Postives = 107/200 (53.50%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            I  +F++  SV K+VRTET I             +A  K   SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER  ++ EE N   I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  NK  R   A +A+ I  E+S+
Sbjct:  134 IDRMFQNTFSVAKKVRTETEIGAAAVSVAFAAVSMA--KHIFSSLSTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQSMCEEFNATAITLAQIPDFLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNKASRKEAAEQAELITEEQSH 326          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_DESVM (Glutamyl-tRNA reductase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=hemA PE=3 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 68/209 (32.54%), Postives = 113/209 (54.07%), Query Frame = 1
Query:   22 GRN-----ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNS 633
            GRN     ++ L   A SV KRVRTET +            ELA     E S   A  ++IGAG+M +L   HL+  G  +++V NR+ ER   +  +  G  ++++ LS  L   A+AD++ +ST +  P+     ++D+  ++        FIDI+VPR++   V +++   +Y++DDLKEVV  N   R  +A +A++I+ EE+ +
Sbjct:  130 GRNATRVVLNRLLHKAFSVAKRVRTETGVASSAVSISYAAVELAKRIFGEMSQYKA--MLIGAGEMAELAATHLLNSGIREIMVANRTFERGLQLARQFKGEAVLFQDLSVRL---AEADIIISSTGAHEPIIRARDIKDV--LKRRKNRPMFFIDIAVPRDIDPDVNNLDNVYLYDIDDLKEVVEENMAQRRDEAAKARSIVEEEAGN 331          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_DESHY (Glutamyl-tRNA reductase OS=Desulfitobacterium hafniense (strain Y51) GN=hemA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.915e-22
Identity = 67/198 (33.84%), Postives = 113/198 (57.07%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            I  +F++A++VGKRVR+ET I            ELA     +    +  +L++GAG+M  L  KHLVA G   ++V NRS +R  A+ EE +G  I Y+ L   L   A+AD+V ++TA+   +   + ++ +  +E       L IDI+VPR++   V ++E   ++++DDL+ VV ++++ R   A++A  I+ EE
Sbjct:  138 IHAIFQNALAVGKRVRSETQIDQHPTSVSYTAVELAKQTFGDVQGKS--ILILGAGEMSALTAKHLVASGADTVLVSNRSMQRAQALAEEFSGRAIPYEELDTAL---AEADIVISATAAAHFVIKPERMRRV--MEQRRQRALLLIDIAVPRDIHPNVGELEGVTLFDIDDLRGVVDSHQKAREEAALQAGRILEEE 328          

HSP 2 Score: 21.557 bits (44), Expect = 3.915e-22
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = 3
Query:  630 QFAAWRDSLETVPTI 674
            +F  W +SL  VPTI
Sbjct:  331 RFVKWHNSLYVVPTI 345          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_MYXXD4.246e-2334.13Glutamyl-tRNA reductase OS=Myxococcus xanthus (str... [more]
HEM1_GEOKA5.545e-2335.15Glutamyl-tRNA reductase OS=Geobacillus kaustophilu... [more]
HEM1_SYNR38.071e-2331.48Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_SHEON9.459e-2336.50Glutamyl-tRNA reductase OS=Shewanella oneidensis G... [more]
HEM1_NATTJ9.459e-2335.71Glutamyl-tRNA reductase OS=Natranaerobius thermoph... [more]
HEM1_SHESR1.235e-2236.68Glutamyl-tRNA reductase OS=Shewanella sp. (strain ... [more]
HEM1_SHESA1.235e-2236.68Glutamyl-tRNA reductase OS=Shewanella sp. (strain ... [more]
HEM1_SHESM1.613e-2236.00Glutamyl-tRNA reductase OS=Shewanella sp. (strain ... [more]
HEM1_DESVM2.107e-2232.54Glutamyl-tRNA reductase OS=Desulfovibrio vulgaris ... [more]
HEM1_DESHY3.915e-2233.84Glutamyl-tRNA reductase OS=Desulfitobacterium hafn... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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