FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_DESHD (Glutamyl-tRNA reductase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=hemA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.915e-22
Identity = 67/198 (33.84%), Postives = 113/198 (57.07%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            I  +F++A++VGKRVR+ET I            ELA     +    +  +L++GAG+M  L  KHLVA G   ++V NRS +R  A+ EE +G  I Y+ L   L   A+AD+V ++TA+   +   + ++ +  +E       L IDI+VPR++   V ++E   ++++DDL+ VV ++++ R   A++A  I+ EE
Sbjct:  138 IHAIFQNALAVGKRVRSETQIDQHPTSVSYTAVELAKQTFGDVQGKS--ILILGAGEMSALTAKHLVASGADTVLVSNRSMQRAQALAEEFSGRAIPYEELDTAL---AEADIVISATAAAHFVIKPERMRRV--MEQRRQRALLLIDIAVPRDIHPNVGELEGVTLFDIDDLRGVVDSHQKAREEAALQAGRILEEE 328          

HSP 2 Score: 21.557 bits (44), Expect = 3.915e-22
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = 3
Query:  630 QFAAWRDSLETVPTI 674
            +F  W +SL  VPTI
Sbjct:  331 RFVKWHNSLYVVPTI 345          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_MOOTA (Glutamyl-tRNA reductase OS=Moorella thermoacetica (strain ATCC 39073) GN=hemA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.131e-22
Identity = 69/201 (34.33%), Postives = 107/201 (53.23%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNS 633
            ++ L++ AI  GKRVRTET I            ELA     +       +LVIGAGKM  L  ++L  KG T ++V NRS +R  A+   + G  +    L + L     AD+V + TA+   +  +D V     V A  G   + IDI+VPR++     D+   ++Y++DDL++VV AN E+R + A +A+ II+ E+ +
Sbjct:  138 LNTLWQQAIYAGKRVRTETRIDANTVSVSYAAVELARQVFHDELDGRT-VLVIGAGKMSTLAARYLKDKGVTTVLVSNRSYDRAVALAATIGGQAVRLDALEDYLP---RADIVISCTAASHYILHRDQVARA--VAARPGVPLMLIDIAVPRDIEPAAGDLPGVKLYDIDDLQQVVLANLEERKKAARQAEGIIAAEAEA 332          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_HELMO (Glutamyl-tRNA reductase OS=Heliobacillus mobilis GN=hemA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.131e-22
Identity = 68/196 (34.69%), Postives = 105/196 (53.57%), Query Frame = 1
Query:   43 FKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            F+ AI+VGKRVRTET I            ELA   L      TA  +V+GAGKM  L +KHLVA+G  K+++ NRS E+   + +   G  I +  ++  L    +AD++ + TA+   +  K  V+ +  ++   G    F DI+VPR++   VA V    +Y++D ++ V+  N  +R + A EA+ II  E N
Sbjct:  142 FQQAITVGKRVRTETGIDQHPVSISYTAVELAEQVLGGLKGRTA--MVLGAGKMSVLTLKHLVAEGVDKIIIANRSVEKAEELAKSCGGEAISFADVNHRLE---EADILISCTAATHYVIRKSMVEQV--MDRRGGKPVFFFDIAVPRDIDPEVAQVPGTHLYDIDAMQHVIDRNLAERRKCAAEAEIIIEHEIN 330          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_GEOUR (Glutamyl-tRNA reductase OS=Geobacter uraniireducens (strain Rf4) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 8.625e-22
Identity = 69/191 (36.13%), Postives = 103/191 (53.93%), Query Frame = 1
Query:   52 AISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            A SV KRVRTET I            ELA     + S  T  +++IGAG+M +L  KH +  G   ++V NR+ ER   + EE +G  + Y+ L + L     AD+V +ST +   +    +V+++  +         FIDI+VPR++   V DVE   +Y VDDL  VVA N E R ++A +A+AI+ +E
Sbjct:  145 AFSVAKRVRTETKIASSAVSVAFAAVELAKKIFGDLSDKT--VMLIGAGEMCELAAKHFINTGVRGVMVTNRTFERAVKLAEEFDGKAVNYEELFDHLH---KADIVLSSTGAPHFIIGPKNVEEV--IRRRKMKPMFFIDIAVPRDIDPKVNDVENIYLYTVDDLNGVVATNLEQRNKEAEKAEAIVEQE 328          

HSP 2 Score: 23.0978 bits (48), Expect = 8.625e-22
Identity = 10/17 (58.82%), Postives = 10/17 (58.82%), Query Frame = 3
Query:  624 IKQFAAWRDSLETVPTI 674
            I QF  W  SLE  PTI
Sbjct:  329 IGQFFKWLSSLEVTPTI 345          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_GEOSM (Glutamyl-tRNA reductase OS=Geobacter sp. (strain M21) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 8.625e-22
Identity = 74/192 (38.54%), Postives = 102/192 (53.12%), Query Frame = 1
Query:   52 AISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPV-EAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            A SV KRVRTET I            ELA     E S  T  +L+IGAG+M +L  KH +  G   ++V NR+ ER   + EE +   + ++ L E L     AD++ +ST   AP F+  H +D+  V          FIDI+VPR++   V DVE   +Y VDDL  VVA N E R  +A +A+AI+ +E
Sbjct:  145 AFSVAKRVRTETKIASSAVSVAFAAVELAKKIFGELSDKT--VLLIGAGEMCELAAKHFINVGVRGVMVTNRTYERAEKLAEEFDAKPVHFEALMETLP---KADIILSSTG--APHFII-HEKDMEDVLRRRKHKPMFFIDIAVPRDIDPKVNDVENCYLYTVDDLNGVVATNLEQRKVEAAKAEAIVEQE 328          

HSP 2 Score: 23.0978 bits (48), Expect = 8.625e-22
Identity = 10/17 (58.82%), Postives = 10/17 (58.82%), Query Frame = 3
Query:  624 IKQFAAWRDSLETVPTI 674
            I QF  W  SLE  PTI
Sbjct:  329 IGQFFKWLSSLEVTPTI 345          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_GEOSF (Glutamyl-tRNA reductase OS=Geobacter sp. (strain FRC-32) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 8.625e-22
Identity = 66/191 (34.55%), Postives = 102/191 (53.40%), Query Frame = 1
Query:   52 AISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            A SV KRVRTET I            ELA     + S  T  +++IGAG+M +L  KH +  G   ++V NR+ ER   + EE +G  + Y+ L + L     AD++ +ST +   +     ++D+  +         FIDI+VPR++   V D+E   +Y VDDL  VVA N E R +++ +A+AI+ +E
Sbjct:  145 AFSVAKRVRTETKIASSAVSVAFAAVELAKKIFGDLSDKT--VMLIGAGEMCELAAKHFINTGVRGVMVTNRTFERAVKLAEEFDGKAVNYEDLFDQLH---KADIILSSTGAPHFIIKPKDIEDV--IRRRKLKPMFFIDIAVPRDIDPKVNDIENIYLYTVDDLNGVVATNLEQRKKESEKAEAIVEQE 328          

HSP 2 Score: 23.0978 bits (48), Expect = 8.625e-22
Identity = 10/17 (58.82%), Postives = 10/17 (58.82%), Query Frame = 3
Query:  624 IKQFAAWRDSLETVPTI 674
            I QF  W  SLE  PTI
Sbjct:  329 IGQFFKWLSSLEVTPTI 345          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACC3 (Glutamyl-tRNA reductase OS=Bacillus cereus (strain 03BB102) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 67/208 (32.21%), Postives = 112/208 (53.85%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  I++ KR  +ET I            EL      E +     +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     KPLSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTDC--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEVMAEKYMGHA---KPLSELQCALLEADILISSTGASDYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SORC5 (Glutamyl-tRNA reductase OS=Sorangium cellulosum (strain So ce56) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 71/212 (33.49%), Postives = 113/212 (53.30%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESNSLQ 639
            +G    G  +      AI VGKRVRTET I            +LA     + +  TA  L+IGAG M +   K LV  G  +++VVNRS +R AA+  E+ G     +P +++     DAD+V +ST+S   +   D V+     +A  G     IDI+VPR++   V  +++  +Y+VDDL ++VA + E R  +A  A+AI+++E+ + +
Sbjct:  145 RGAKTLGVRLGRAAHRAIKVGKRVRTETAIGAGQVSVSSVAIDLARQIFADLAGHTA--LLIGAGDMAEAASKLLVRAGA-RLIVVNRSPDRAAALAREVGGEP---RPWADLERSVIDADIVISSTSSPNYVVTPDLVRRAR--KARKGRSLFLIDIAVPRDIDPAVNKLDSVYLYDVDDLSQIVAESVEGRAAEAARAEAIVADEAQAFE 348          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALTY (Glutamyl-tRNA reductase OS=Salmonella typhimurium GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/197 (34.01%), Postives = 112/197 (56.85%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER  A+ +E+ G E+I   LS++ +   DAD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALADEV-GAEVI--SLSDIDARLQDADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEAS 330          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALTI (Glutamyl-tRNA reductase OS=Salmonella typhi GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/197 (34.01%), Postives = 112/197 (56.85%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER  A+ +E+ G E+I   LS++ +   DAD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALADEV-GAEVI--SLSDIDARLQDADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEAS 330          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_DESHD3.915e-2233.84Glutamyl-tRNA reductase OS=Desulfitobacterium hafn... [more]
HEM1_MOOTA6.131e-2234.33Glutamyl-tRNA reductase OS=Moorella thermoacetica ... [more]
HEM1_HELMO6.131e-2234.69Glutamyl-tRNA reductase OS=Heliobacillus mobilis G... [more]
HEM1_GEOUR8.625e-2236.13Glutamyl-tRNA reductase OS=Geobacter uraniireducen... [more]
HEM1_GEOSM8.625e-2238.54Glutamyl-tRNA reductase OS=Geobacter sp. (strain M... [more]
HEM1_GEOSF8.625e-2234.55Glutamyl-tRNA reductase OS=Geobacter sp. (strain F... [more]
HEM1_BACC31.784e-2132.21Glutamyl-tRNA reductase OS=Bacillus cereus (strain... [more]
HEM1_SORC52.330e-2133.49Glutamyl-tRNA reductase OS=Sorangium cellulosum (s... [more]
HEM1_SALTY2.330e-2134.01Glutamyl-tRNA reductase OS=Salmonella typhimurium ... [more]
HEM1_SALTI2.330e-2134.01Glutamyl-tRNA reductase OS=Salmonella typhi GN=hem... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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