FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALSV (Glutamyl-tRNA reductase OS=Salmonella schwarzengrund (strain CVM19633) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/197 (34.01%), Postives = 112/197 (56.85%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER  A+ +E+ G E+I   LS++ +   DAD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALADEV-GAEVI--SLSDIDARLQDADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEAS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALPK (Glutamyl-tRNA reductase OS=Salmonella paratyphi A (strain AKU_12601) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/197 (34.01%), Postives = 112/197 (56.85%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER  A+ +E+ G E+I   LS++ +   DAD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALADEV-GAEVI--SLSDIDARLQDADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEAS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALPB (Glutamyl-tRNA reductase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/197 (34.01%), Postives = 112/197 (56.85%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER  A+ +E+ G E+I   LS++ +   DAD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALADEV-GAEVI--SLSDIDARLQDADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEAS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALPA (Glutamyl-tRNA reductase OS=Salmonella paratyphi A GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/197 (34.01%), Postives = 112/197 (56.85%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER  A+ +E+ G E+I   LS++ +   DAD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALADEV-GAEVI--SLSDIDARLQDADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEAS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALNS (Glutamyl-tRNA reductase OS=Salmonella newport (strain SL254) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/197 (34.01%), Postives = 112/197 (56.85%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER  A+ +E+ G E+I   LS++ +   DAD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALADEV-GAEVI--SLSDIDARLQDADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEAS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALHS (Glutamyl-tRNA reductase OS=Salmonella heidelberg (strain SL476) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/197 (34.01%), Postives = 112/197 (56.85%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER  A+ +E+ G E+I   LS++ +   DAD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALADEV-GAEVI--SLSDIDARLQDADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEAS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALG2 (Glutamyl-tRNA reductase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/197 (34.01%), Postives = 112/197 (56.85%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER  A+ +E+ G E+I   LS++ +   DAD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALADEV-GAEVI--SLSDIDARLQDADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEAS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALEP (Glutamyl-tRNA reductase OS=Salmonella enteritidis PT4 (strain P125109) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/197 (34.01%), Postives = 112/197 (56.85%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER  A+ +E+ G E+I   LS++ +   DAD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALADEV-GAEVI--SLSDIDARLQDADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEAS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALDC (Glutamyl-tRNA reductase OS=Salmonella dublin (strain CT_02021853) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/197 (34.01%), Postives = 112/197 (56.85%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER  A+ +E+ G E+I   LS++ +   DAD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALTDEV-GAEVI--SLSDIDARLQDADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEAS 330
[Close]
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALAR (Glutamyl-tRNA reductase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/197 (34.01%), Postives = 112/197 (56.85%), Query Frame = 1 
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER  A+ +E+ G E+I   LS++ +   DAD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALADEV-GAEVI--SLSDIDARLQDADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEAS 330
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_SALSV2.330e-2134.01Glutamyl-tRNA reductase OS=Salmonella schwarzengru... [more]
HEM1_SALPK2.330e-2134.01Glutamyl-tRNA reductase OS=Salmonella paratyphi A ... [more]
HEM1_SALPB2.330e-2134.01Glutamyl-tRNA reductase OS=Salmonella paratyphi B ... [more]
HEM1_SALPA2.330e-2134.01Glutamyl-tRNA reductase OS=Salmonella paratyphi A ... [more]
HEM1_SALNS2.330e-2134.01Glutamyl-tRNA reductase OS=Salmonella newport (str... [more]
HEM1_SALHS2.330e-2134.01Glutamyl-tRNA reductase OS=Salmonella heidelberg (... [more]
HEM1_SALG22.330e-2134.01Glutamyl-tRNA reductase OS=Salmonella gallinarum (... [more]
HEM1_SALEP2.330e-2134.01Glutamyl-tRNA reductase OS=Salmonella enteritidis ... [more]
HEM1_SALDC2.330e-2134.01Glutamyl-tRNA reductase OS=Salmonella dublin (stra... [more]
HEM1_SALAR2.330e-2134.01Glutamyl-tRNA reductase OS=Salmonella arizonae (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
back to top