FC930965

Overview
NameFC930965
Unique NameFC930965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_SALA4 (Glutamyl-tRNA reductase OS=Salmonella agona (strain SL483) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/197 (34.01%), Postives = 112/197 (56.85%), Query Frame = 1
Query:   40 LFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESN 630
            +F+ + SV KRVRTET+I             LA       S +T  +L++GAG+  +LV +HL      KM++ NR+ ER  A+ +E+ G E+I   LS++ +   DAD++ +STAS  P+  K  V+    +++      L +DI+VPR+V   V  +  A +Y+VDDL+ +++ N   R   A+EA+ I+ +E++
Sbjct:  141 MFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIF--ESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALADEV-GAEVI--SLSDIDARLQDADIIISSTASPLPIIGKGMVERA--LKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEAS 330          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_DESVV (Glutamyl-tRNA reductase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/199 (33.67%), Postives = 105/199 (52.76%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            ++ L   A SV KRVRTET +            ELA     E +   A  ++IGAG+M +L   HL+  G +K+ V NR+ ER   +  + NG  I ++ L E L   ADAD++ +ST +   +     ++D+  +         FIDI+VPR++   V +++   +Y++DDLKEVV  N   R  +A +A  I+ EE+
Sbjct:  138 LNRLLHKAFSVAKRVRTETGVASSAVSISYAAVELAKRIFGEMNQYKA--MLIGAGEMAELAATHLLHAGISKIYVANRTFERGRELARQFNGEAIHFEDLFERL---ADADIIISSTGAHEAIIRARDIKDV--LRRRKHRPMFFIDIAVPRDIDPDVNNLDNVYLYDIDDLKEVVEENLAQRREEASKALTIVEEET 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_DESVH (Glutamyl-tRNA reductase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/199 (33.67%), Postives = 105/199 (52.76%), Query Frame = 1
Query:   31 ISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEES 627
            ++ L   A SV KRVRTET +            ELA     E +   A  ++IGAG+M +L   HL+  G +K+ V NR+ ER   +  + NG  I ++ L E L   ADAD++ +ST +   +     ++D+  +         FIDI+VPR++   V +++   +Y++DDLKEVV  N   R  +A +A  I+ EE+
Sbjct:  138 LNRLLHKAFSVAKRVRTETGVASSAVSISYAAVELAKRIFGEMNQYKA--MLIGAGEMAELAATHLLHAGISKIYVANRTFERGRELARQFNGEAIHFEDLFERL---ADADIIISSTGAHEAIIRARDIKDV--LRRRKHRPMFFIDIAVPRDIDPDVNNLDNVYLYDIDDLKEVVEENLAQRREEASKALTIVEEET 329          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACHK (Glutamyl-tRNA reductase OS=Bacillus thuringiensis subsp. konkukian GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/208 (32.21%), Postives = 112/208 (53.85%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  I++ KR  +ET I            EL      E +     +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     KPLSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTDC--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEIMAEKYMGHA---KPLSELQCALLEADILISSTGASDYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACCZ (Glutamyl-tRNA reductase OS=Bacillus cereus (strain ZK / E33L) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/208 (32.21%), Postives = 112/208 (53.85%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  I++ KR  +ET I            EL      E +     +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     KPLSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTDC--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEIMAEKYMGHA---KPLSELQCALLEADILISSTGASDYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACCQ (Glutamyl-tRNA reductase OS=Bacillus cereus (strain Q1) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/208 (32.21%), Postives = 112/208 (53.85%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  I++ KR  +ET I            EL      E +     +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     KPLSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTDC--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEIMAEKYMGHA---KPLSELQCALLEADILISSTGASDYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACC7 (Glutamyl-tRNA reductase OS=Bacillus cereus (strain AH187) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/208 (32.21%), Postives = 112/208 (53.85%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  I++ KR  +ET I            EL      E +     +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     KPLSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTDC--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEIMAEKYMGHA---KPLSELQCALLEADILISSTGASDYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACC1 (Glutamyl-tRNA reductase OS=Bacillus cereus (strain ATCC 10987) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/208 (32.21%), Postives = 112/208 (53.85%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  I++ KR  +ET I            EL      E +     +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     KPLSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTDC--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEIMAEKYMGHA---KPLSELQCALLEADILISSTGASDYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACC0 (Glutamyl-tRNA reductase OS=Bacillus cereus (strain AH820) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/208 (32.21%), Postives = 112/208 (53.85%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  I++ KR  +ET I            EL      E +     +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     KPLSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTDC--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEIMAEKYMGHA---KPLSELQCALLEADILISSTGASDYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
BLAST of FC930965 vs. ExPASy Swiss-Prot
Match: HEM1_BACAN (Glutamyl-tRNA reductase OS=Bacillus anthracis GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 67/208 (32.21%), Postives = 112/208 (53.85%), Query Frame = 1
Query:    4 QGVVGFGRNISGLFKHAISVGKRVRTETNIXXXXXXXXXXXXELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLF-IDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIISEE 624
            Q V   G   + LFK  I++ KR  +ET I            EL      E +     +L++GAGKMG+L +++L   G  K+ V+NR+  +   + E+  G     KPLSE+     +AD++ +ST +   +  K+    +  VE    G  LF +DI+VPR++   + ++E + +Y++DDL+ VV AN+ +RL++A + Q +I EE
Sbjct:  129 QQVKATGTIFNELFKQVITLAKRAHSETTIGESAMSVSYAAVELGKKIFGELTDC--HVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEIMAEKYMGHA---KPLSELQCALLEADILISSTGASDYVITKEM---MTKVEKMRSGRPLFMVDIAVPRDIDPAIDELEGSFLYDIDDLQGVVEANRAERLKEAEKIQFMIEEE 328          
The following BLAST results are available for this feature:
BLAST of FC930965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
HEM1_SALA42.330e-2134.01Glutamyl-tRNA reductase OS=Salmonella agona (strai... [more]
HEM1_DESVV2.330e-2133.67Glutamyl-tRNA reductase OS=Desulfovibrio vulgaris ... [more]
HEM1_DESVH2.330e-2133.67Glutamyl-tRNA reductase OS=Desulfovibrio vulgaris ... [more]
HEM1_BACHK2.330e-2132.21Glutamyl-tRNA reductase OS=Bacillus thuringiensis ... [more]
HEM1_BACCZ2.330e-2132.21Glutamyl-tRNA reductase OS=Bacillus cereus (strain... [more]
HEM1_BACCQ2.330e-2132.21Glutamyl-tRNA reductase OS=Bacillus cereus (strain... [more]
HEM1_BACC72.330e-2132.21Glutamyl-tRNA reductase OS=Bacillus cereus (strain... [more]
HEM1_BACC12.330e-2132.21Glutamyl-tRNA reductase OS=Bacillus cereus (strain... [more]
HEM1_BACC02.330e-2132.21Glutamyl-tRNA reductase OS=Bacillus cereus (strain... [more]
HEM1_BACAN2.330e-2132.21Glutamyl-tRNA reductase OS=Bacillus anthracis GN=h... [more]

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Properties
Property NameValue
Genbank descriptionC34110H11EF PostHarvP1 Citrus clementina cDNA clone C34110H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930965 ID=FC930965; Name=FC930965; organism=Citrus clementina; type=EST; length=694bp
GGTCAAGGAGTTGTTGGATTTGGAAGGAACATTAGCGGACTGTTCAAGCA
TGCAATCAGTGTTGGTAAGCGGGTTAGAACCGAGACAAATATTGCTGCTG
GGGCTGTTTCCGTCAGCTCTGCTGCTGTTGAACTGGCTTTGATGAAGCTT
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCCGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCTCTGAGGAATCAAACAGTTTGCAGCTTGGAGGGAT
TCATTGGAGACTGTTCCTACTATTAAGAATTGAGAGCTTATGCT
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