FC930966

Overview
NameFC930966
Unique NameFC930966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: MKRN2_HUMAN (Probable E3 ubiquitin-protein ligase makorin-2 OS=Homo sapiens GN=MKRN2 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 61/205 (29.76%), Postives = 89/205 (43.41%), Query Frame = 2
Query:  209 SKRVLCKFFAHGACLKGEHCEFSHDWKDP-PNNICTYYQKGFCSYGSRCRYEHVKP---------XXXXXXXXXXXXXXXXXXXXXXGITKVPGVMP-------------ELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRS----------------ICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHPF 706
            +K++ C++F HG C +G  C FSHD  +  P+ IC YYQKG+C+YG+RCRY+H +P                                I K     P              LS ++     P+  + NP S C+D   + E+ +P +   A RS                +C +AAAG C  G+ C ++HG+ C  C    LHPF
Sbjct:    3 TKQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAAGGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKTQPSMVS-NPGS-CSDPQPSPEM-KPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECRFGDACVYLHGEVCEICRLQVLHPF 204          
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: MKRN2_SERQU (Probable E3 ubiquitin-protein ligase makorin-2 OS=Seriola quinqueradiata GN=mkrn2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 59/202 (29.21%), Postives = 84/202 (41.58%), Query Frame = 2
Query:  209 SKRVLCKFFAHGACLKGEHCEFSHDWKDP-PNNICTYYQKGFCSYGSRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGI--------TKVPGVMPE----------LSALSRPFLPPNKTAWNPESVCN-------------DSLENDEVDEP-----RNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHP 703
            +K+V C++F HG C +G  C FSHD  +  P+ IC +YQ+G C+YG RCRY+H+KP                      G           V G M +          +  + R F  P  + W+  S                D+   D+   P     +NL      +C +AA G+C   E C ++HGD C  CG   LHP
Sbjct:    3 TKQVTCRYFLHGVCREGSRCLFSHDLNNSKPSTICKFYQRGVCAYGERCRYDHIKPSSRGGGGGAPEDQAGGGGAGGGGAGIGGAGGGPSVRGGMKKNLVLRDRVLGVDRVDRMFGAPADSMWSDVSTAAAPHSYVEAIRTGLDASAQDQATPPVCGPSQNLP----QLCPYAANGHCFYEENCTYLHGDLCEVCGLQVLHP 200          
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: MKRN1_TAKRU (Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes GN=mkrn1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19
Identity = 55/185 (29.73%), Postives = 79/185 (42.70%), Query Frame = 2
Query:  209 SKRVLCKFFAHGACLKGEHCEFSHDWKD--PPNNICTYYQKGFCSYGSRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGITKVPGVMPELS-----------ALSRPFLPPNKTAWNPESV-------CNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHP 703
            +K V C++F HG C +G++C +SHD     P   +C ++QKG C +G RCR+EH KP                        +  P + PE S           A +  F+P        ESV         + L  D   +   L+   + +C +AA G C  G  C ++HGD C  CG   LHP
Sbjct:   19 TKHVTCRYFMHGLCKEGDNCRYSHDLTSSKPAAMMCKFFQKGNCVFGERCRFEHCKPTKSEEVSNPQMLLLS---------STPPPIDPECSESGPRLKTQDWANAAEFVPGQPYCGRAESVDVEISIPLIEELNGDATTDKEELR---KQLCPYAAVGECRYGVNCAYLHGDVCDMCGLQVLHP 191          
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: MKRN1_DANRE (Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio GN=mkrn1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 54/183 (29.51%), Postives = 78/183 (42.62%), Query Frame = 2
Query:  209 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNN-ICTYYQKGFCSYGSRCRYEHVKP---------XXXXXXXXXXXXXXXXXXXXXXGITKVPGVMPELSAL-----SRPFLPPNKTAWNPESVCNDS---LENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHP 703
            +K V C++F HG C +GE+C +SHD        IC ++QKG C++G RCRYEH KP                               G T      P+ S       +  F+P        + V  +    L  +E ++ +  K   + +C +AA G C  G  C ++HGD C  CG   LHP
Sbjct:   19 TKHVTCRYFMHGLCKEGENCRYSHDLSSCKQTMICKFFQKGCCAFGDRCRYEHTKPSKQDEVPSSKPSMPLTAAPLAGTPEPVSDGPGGTTGAQEKPQGSGAVDWVNAAEFVPGQPYCGRADPVLCEGPGPLIEEEYEKEQANKEMKKQLCPYAAVGECRYGLNCAYLHGDVCDMCGLQVLHP 201          
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: MKRN2_TAKRU (Probable E3 ubiquitin-protein ligase makorin-2 OS=Takifugu rubripes GN=mkrn2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 52/178 (29.21%), Postives = 79/178 (44.38%), Query Frame = 2
Query:  209 SKRVLCKFFAHGACLKGEHCEFSHD-WKDPPNNICTYYQKGFCSYGSRCRYEHVK-PXXXXXXXXXXXXXXXXXXXXXXGITKVPGVMPELSALSR--------PFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSI---CSFAAAGNCPRGEKCPHIHGDTCPTCGKACLHP 703
            +K+V C++F HG C +G HC+FSHD     P+ IC +YQ+G C+YG RCRY+HVK                        G  K   V  E   + R          + P    +  +++      + +   P  +   ++ +   C +AA G+C   E C ++HGD C  CG   L P
Sbjct:    3 TKQVTCRYFLHGVCREGNHCQFSHDPSSSKPSTICKFYQRGTCAYGERCRYDHVKLSSRGGGAFDMAGVGGARDGASTRGAAKKTFVHQERENMFRAPAESFGADVMAPAPHTY-VDAIRTGLSSSSQDHTPPTMAGVNQDLPRLCPYAAVGHCYYEENCIYLHGDKCEVCGLQVLDP 179          
BLAST of FC930966 vs. ExPASy Swiss-Prot
Match: MKRN2_XENTR (Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus tropicalis GN=mkrn2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 2
Query:  209 SKRVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYGSRCRYEHVKP 373
            +K V C++F HG C +G  C FSHD     P+ +C +YQ+G C+YG+RCRY+HVKP
Sbjct:    3 TKHVTCRYFLHGVCREGGRCLFSHDLATSKPSTVCRFYQRGQCAYGARCRYDHVKP 58          
The following BLAST results are available for this feature:
BLAST of FC930966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MKRN2_HUMAN2.273e-1929.76Probable E3 ubiquitin-protein ligase makorin-2 OS=... [more]
MKRN2_SERQU5.064e-1929.21Probable E3 ubiquitin-protein ligase makorin-2 OS=... [more]
MKRN1_TAKRU8.638e-1929.73Probable E3 ubiquitin-protein ligase makorin-1 OS=... [more]
MKRN1_DANRE1.924e-1829.51Probable E3 ubiquitin-protein ligase makorin-1 OS=... [more]
MKRN2_TAKRU2.127e-1729.21Probable E3 ubiquitin-protein ligase makorin-2 OS=... [more]
MKRN2_XENTR4.152e-1351.79Probable E3 ubiquitin-protein ligase makorin-2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34110H12EF PostHarvP1 Citrus clementina cDNA clone C34110H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930966 ID=FC930966; Name=FC930966; organism=Citrus clementina; type=EST; length=709bp
GGAATCAATGATGGAAATTCACGTGCCCCCTTCATTGTCGCTTCAATTTC
TCTCTCCCCATTTTAGCTTTCCATTAAAACAATCAATCAATTGAATGATT
TTAAGTTTCTAGGGTTTCAATTGATTCATCGGAAGCAAATAAAAAGGACT
CGTTTCGAACACTTTAATTTATTTGCGTCTTTCACAAATTCAAGAACGAA
ACGACATGTCCAAGAGGGTCCTTTGCAAGTTCTTTGCTCATGGAGCATGT
CTGAAAGGCGAGCATTGTGAGTTTTCACATGATTGGAAGGATCCACCGAA
TAATATATGCACTTATTATCAGAAAGGGTTCTGCTCTTATGGTAGTCGGT
GCAGATATGAGCATGTCAAACCTTCTCGGTCAGAGTCGGCTGCTTCATCT
TCCTCATCAGTTTCTCATCCTTCAAGAGCTACATCAAGTGGGATAACTAA
AGTTCCAGGTGTCATGCCAGAGCTATCTGCATTGAGTAGACCTTTTCTTC
CTCCTAATAAGACAGCATGGAATCCGGAGTCTGTGTGCAATGATTCTTTA
GAGAATGATGAGGTTGACGAGCCCAGGAATCTAAAACCTGCTGACCGTTC
TATCTGTTCATTTGCTGCTGCTGGTAATTGTCCTCGTGGGGAAAAATGTC
CTCATATTCATGGAGACACATGCCCAACTTGTGGGAAAGCATGCTTGCAT
CCTTTCAGA
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