FC930967

Overview
NameFC930967
Unique NameFC930967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930967 vs. ExPASy Swiss-Prot
Match: TXND2_RAT (Thioredoxin domain-containing protein 2 OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 40/130 (30.77%), Postives = 69/130 (53.08%), Query Frame = 1
Query:    4 KTQKQISRNQNREVI*LVIIIKMAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 393
            K+ + +  ++N E+      I+  EEG V      E + E L+   A +KL+ VDF+A WC PC+ M P    L+ K   VIFL+VD ++ + + ++  V  +PTF   K  + +    GA  ++L+ ++
Sbjct:  420 KSSEDVQPSEN-EIFPFEAEIETLEEGMVRVIKDKEEFEEVLKD--AGEKLVAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVDTEDCEQLVQDCEVFHLPTFQFYKNEEKVGEFSGALVEKLEKSI 546          
BLAST of FC930967 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 31/78 (39.74%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  139 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 369
            +++ K ++VDF A+WC PCK+++P+L E+A ++   +   K+DVD    +A E+ V ++PT +L + G+ ++RIVGAK
Sbjct:  364 LSSNKPVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPTMILFQGGQPVKRIVGAK 441          
BLAST of FC930967 vs. ExPASy Swiss-Prot
Match: THIO_MYCSM (Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  139 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 369
            + + K ++VDF A+WC PCK+++P+L E+A +      V  + VDVD   + A ++ V ++PT +L K+G  ++RIVGAK
Sbjct:   20 LGSSKPVLVDFWATWCGPCKMVAPVLEEIAAEKGDQLTVAKIDVDVDANPATARDFQVVSIPTMILFKDGAPVKRIVGAK 99          
BLAST of FC930967 vs. ExPASy Swiss-Prot
Match: THIO1_DROYA (Thioredoxin-1 OS=Drosophila yakuba GN=dhd PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 35/97 (36.08%), Postives = 57/97 (58.76%), Query Frame = 1
Query:   94 SCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDEL 381
            S  T+  ++++++   A  KLIV+DF A+WC PCK M   +  LA+K     + LK+DVD+ + + E + V +MPTFV  +  + L    GA + +L
Sbjct:    3 SVRTMTDFHKRIEA--ADDKLIVLDFYANWCGPCKDMESTVKSLARKYSTKAVVLKIDVDKFEELTERYKVRSMPTFVFLRNNRRLAAFSGADEHKL 97          
The following BLAST results are available for this feature:
BLAST of FC930967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
TXND2_RAT7.353e-1130.77Thioredoxin domain-containing protein 2 OS=Rattus ... [more]
TRXB_MYCLE7.353e-1139.74Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
THIO_MYCSM7.353e-1140.00Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=... [more]
THIO1_DROYA9.604e-1136.08Thioredoxin-1 OS=Drosophila yakuba GN=dhd PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC34100A01EF PostHarvP1 Citrus clementina cDNA clone C34100A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930967 ID=FC930967; Name=FC930967; organism=Citrus clementina; type=EST; length=567bp
GAGAAAACACAGAAACAAATATCAAGAAATCAGAACAGAGAAGTAATTTA
ACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGATCAGCTGCC
ACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATTGCGGCAAAG
AAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCCATGCAAGTT
GATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCGCTGTCATAT
TCTTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTGAGGAATGGGCT
GTGGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAAAGTCCTGGA
GAGGATTGTGGGAGCGAAGAAAGATGAGCTGCAGCTGGCTGTCGAAAAGC
ACGCAACAACTGTTGAGAATGCAACTACTGCTAATGCTTGATTGATGCGT
ACATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGTTTGTGGTTGCTT
AATGTAAGAATATGGTACCATGTTTAACAGGCCTGTATATACGAATAAAT
GACAATCTTCTAGCAAA
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