FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.819e-56
Identity = 105/166 (63.25%), Postives = 129/166 (77.71%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 500
            T E MP    +A +L  +LTEVRKNGT P+LRPDGKTQVTVEY N+     PVR+  ++ISTQH   V+ ++I ADL +HVIK VIP + LD+ T +++NP+GRFVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK++VA+G+A
Sbjct:  139 TEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENTKYYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGIA 300          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.819e-56
Identity = 105/166 (63.25%), Postives = 129/166 (77.71%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 500
            T E MP    +A +L  +LTEVRKNGT P+LRPDGKTQVTVEY N+     PVR+  ++ISTQH   V+ ++I ADL +HVIK VIP + LD+ T +++NP+GRFVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK++VA+G+A
Sbjct:  139 TEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENTKYYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGIA 300          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_ANATD (S-adenosylmethionine synthetase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=metK PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.819e-56
Identity = 108/169 (63.91%), Postives = 128/169 (75.74%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP LMP+   LA KL  +L  VRK G  P+LRPDGKTQVTVEY ++     PVRV TV++STQH   VT+ +I AD+ +HVIKPVIP+  LD  T   +NP+GRFVIGGP GD+GLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS  Y  R  AK+IVASGLA++C
Sbjct:  141 TPVLMPMPIYLAHKLARRLAYVRKEGILPYLRPDGKTQVTVEYEDDK----PVRVDTVVVSTQHSPEVTHAQIEADVIEHVIKPVIPEGMLDKNTKIFINPTGRFVIGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSATYAARYVAKNIVASGLAKKC 305          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CLONN (S-adenosylmethionine synthetase OS=Clostridium novyi (strain NT) GN=metK PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 7.599e-56
Identity = 105/166 (63.25%), Postives = 129/166 (77.71%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 500
            T E MPL   +A KL  KL EVRKNGT  +LRPDGKTQVTVEY +      PVR+  V++STQHD  VT ++I  D+ +HVIK V+P+++LDD+T +++NP+GRFVIGGPHGD GLTGRKII+DTYGG   HGGGAFSGKDPTKVDRS AY  R  AK++VA+G+A
Sbjct:  139 TKEYMPLPINMAHKLSRKLAEVRKNGTLAYLRPDGKTQVTVEYEDNK----PVRIDAVVVSTQHDPEVTQEQIQKDIMEHVIKTVVPNEWLDDETKYYINPTGRFVIGGPHGDTGLTGRKIIVDTYGGSGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGVA 300          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CALS8 (S-adenosylmethionine synthetase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=metK PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.296e-55
Identity = 104/169 (61.54%), Postives = 129/169 (76.33%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP LMP+   LA KL  +L  VRK G  P+LRPDGKTQVTVEY ++     P+RV T+++STQH   VT+ +I AD+ +HVIKP+IP+  LD  T  ++NP+GRFVIGGP GD+GLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS  Y  R  AK+IVA+GLA++C
Sbjct:  141 TPVLMPMPIYLAHKLARRLAYVRKGGILPYLRPDGKTQVTVEYEDDR----PIRVDTIVVSTQHSPEVTHAQIEADVIEHVIKPIIPEGMLDKNTKIYINPTGRFVIGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSATYAARYVAKNIVAAGLAKKC 305          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_THESQ (S-adenosylmethionine synthetase OS=Thermotoga sp. (strain RQ2) GN=metK PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.693e-55
Identity = 105/166 (63.25%), Postives = 126/166 (75.90%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 500
            TPE MPL   LA KL  +L EVRKNGT P+LRPDGKTQVT+EY ++     PVRV TVLISTQHD  ++  ++   + +HVI PVIP++Y DDK    +NP+GRFV+GGP  D GLTGRKII+DTYGGW  HGGGAFSGKDPTKVDRS  Y+ R  AK++VA+GLA
Sbjct:  141 TPEYMPLPITLAHKLAMRLAEVRKNGTLPFLRPDGKTQVTIEYEDDK----PVRVDTVLISTQHDPDISQADLREAIIEHVINPVIPEQYRDDKMKILVNPTGRFVLGGPMADTGLTGRKIIVDTYGGWVPHGGGAFSGKDPTKVDRSAHYMARYVAKNVVAAGLA 302          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_THEP1 (S-adenosylmethionine synthetase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=metK PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.693e-55
Identity = 105/166 (63.25%), Postives = 126/166 (75.90%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 500
            TPE MPL   LA KL  +L EVRKNGT P+LRPDGKTQVT+EY ++     PVRV TVLISTQHD  ++  ++   + +HVI PVIP++Y DDK    +NP+GRFV+GGP  D GLTGRKII+DTYGGW  HGGGAFSGKDPTKVDRS  Y+ R  AK++VA+GLA
Sbjct:  141 TPEYMPLPITLAHKLAMRLAEVRKNGTLPFLRPDGKTQVTIEYEDDK----PVRVDTVLISTQHDPDISQADLREAIIEHVINPVIPEQYRDDKMKILVNPTGRFVLGGPMADTGLTGRKIIVDTYGGWVPHGGGAFSGKDPTKVDRSAHYMARYVAKNVVAAGLA 302          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_THEMA (S-adenosylmethionine synthetase OS=Thermotoga maritima GN=metK PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.693e-55
Identity = 105/166 (63.25%), Postives = 126/166 (75.90%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 500
            TPE MPL   LA KL  +L EVRKNGT P+LRPDGKTQVT+EY ++     PVRV TVLISTQHD  ++  ++   + +HVI PVIP++Y DDK    +NP+GRFV+GGP  D GLTGRKII+DTYGGW  HGGGAFSGKDPTKVDRS  Y+ R  AK++VA+GLA
Sbjct:  141 TPEYMPLPITLAHKLAMRLAEVRKNGTLPFLRPDGKTQVTIEYEDDK----PVRVDTVLISTQHDPDISQADLREAIIEHVINPVIPEQYRDDKMKILVNPTGRFVLGGPMADTGLTGRKIIVDTYGGWVPHGGGAFSGKDPTKVDRSAHYMARYVAKNVVAAGLA 302          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_GEOKA (S-adenosylmethionine synthetase OS=Geobacillus kaustophilus GN=metK PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.693e-55
Identity = 105/169 (62.13%), Postives = 130/169 (76.92%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T ELMP+   LA +L  +L EVRK    P+LRPDGKTQVT+EY +ENG   PVRV T+++S QH   +T ++I  D+K+ VIKPV+P + LD+ T + +NP+GRFVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+GLA +C
Sbjct:  144 TEELMPMPISLAHRLARRLAEVRKTDVLPYLRPDGKTQVTIEY-DENGK--PVRVDTIVVSAQHHPEITQEQIQRDIKEQVIKPVVPAELLDENTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADKC 309          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_BACCR (S-adenosylmethionine synthetase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=metK PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.693e-55
Identity = 112/168 (66.67%), Postives = 131/168 (77.98%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            T ELMPL   LA KL  +LTEVRK+ T  +LRPDGKTQVTVEY +ENG   PVRV T++ISTQH   VT +EI  DLK+HVIK V+P + +D +T F +NP+GRFVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKD TKVDRS AY  R  AK+IVA+GLA +
Sbjct:  144 TQELMPLPISLAHKLARRLTEVRKDDTLSYLRPDGKTQVTVEY-DENGK--PVRVDTIVISTQHHPDVTWEEIDRDLKEHVIKAVVPAELMDGETKFFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEK 308          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CLOPS5.819e-5663.25S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP15.819e-5663.25S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_ANATD5.819e-5663.91S-adenosylmethionine synthetase OS=Anaerocellum th... [more]
METK_CLONN7.599e-5663.25S-adenosylmethionine synthetase OS=Clostridium nov... [more]
METK_CALS81.296e-5561.54S-adenosylmethionine synthetase OS=Caldicellulosir... [more]
METK_THESQ1.693e-5563.25S-adenosylmethionine synthetase OS=Thermotoga sp. ... [more]
METK_THEP11.693e-5563.25S-adenosylmethionine synthetase OS=Thermotoga petr... [more]
METK_THEMA1.693e-5563.25S-adenosylmethionine synthetase OS=Thermotoga mari... [more]
METK_GEOKA1.693e-5562.13S-adenosylmethionine synthetase OS=Geobacillus kau... [more]
METK_BACCR1.693e-5566.67S-adenosylmethionine synthetase OS=Bacillus cereus... [more]

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Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
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