FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_DEHE1 (S-adenosylmethionine synthetase OS=Dehalococcoides ethenogenes (strain 195) GN=metK PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.256e-50
Identity = 97/168 (57.74%), Postives = 124/168 (73.81%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPE MPL   LA +L  +L+EVRKNGT  +LRPDGK+QVTVEY+N        R+ +V+I  QHD  VT ++I AD+ + VIKP+IP   LD+ T +++N +GRFV+GGP  D G TGRKI++DTYGG+  HGGGAFSGKDPTKVDRS  Y+ R  AK++VA+GLA R
Sbjct:  147 TPEYMPLPISLAHRLSKRLSEVRKNGTLAYLRPDGKSQVTVEYHNGEAK----RISSVVIGAQHDPDVTTEKIQADIIREVIKPIIPTNLLDENTEYYVNATGRFVVGGPVSDTGFTGRKILVDTYGGFARHGGGAFSGKDPTKVDRSACYMARYIAKNLVAAGLADR 310          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SYNJA (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain JA-3-3Ab) GN=metK PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.640e-50
Identity = 107/179 (59.78%), Postives = 127/179 (70.95%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKQHVIKPVIPDKYL--DDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMPL   LA +L  +L  VRKNGT P+LRPDGKTQVTV Y  E G   PV +HT+LISTQH        +E    + I ADL + V++PV  +  +  D  T F  NP+G+FVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+GLA++C
Sbjct:  136 TPELMPLPISLAHRLSRQLAAVRKNGTLPYLRPDGKTQVTVAY--EEGR--PVGIHTLLISTQHTPTIGAITEEAAVQERIRADLWEAVVQPVFAELPIKPDGNTRFLTNPTGKFVIGGPQGDAGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLAQKC 310          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_GEOSL (S-adenosylmethionine synthetase OS=Geobacter sulfurreducens GN=metK PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.142e-50
Identity = 97/169 (57.40%), Postives = 128/169 (75.74%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMP++ + + +L  KL EVRKNGT  +LRPD K+QV+++Y ++     PVRV TV+IS+QH   V+ + I   + + V+K +IP + +DDKT F +NP+GRFVIGGP GD GLTGRKII+D+YGG  AHGGGAFSGKDP+KVDRS AY+ R  AK++VA+GL  RC
Sbjct:  135 TPELMPMTIMYSHRLTQKLAEVRKNGTLDFLRPDSKSQVSIQYVDDR----PVRVDTVVISSQHTPEVSYETIKEGIIEEVVKKIIPVELMDDKTRFLINPTGRFVIGGPMGDCGLTGRKIIVDSYGGHGAHGGGAFSGKDPSKVDRSAAYMGRYVAKNLVAAGLCERC 299          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SYNJB (S-adenosylmethionine synthetase OS=Synechococcus sp. GN=metK PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 2.797e-50
Identity = 107/179 (59.78%), Postives = 126/179 (70.39%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKQHVIKPVIPDKYL--DDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMPL   LA +L  +L  VRKNGT P+LRPDGKTQVTV Y  E G   PV +HT+LISTQH        +E    + I ADL + V+ PV  +  +  D  T F  NP+G+FVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+GLA++C
Sbjct:  136 TPELMPLPISLAHRLSRQLATVRKNGTLPYLRPDGKTQVTVAY--EEGR--PVGIHTLLISTQHTPTIGAITEEAAVQERIRADLWEAVVTPVFAELPIKPDSHTRFLTNPTGKFVIGGPQGDAGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLAQKC 310          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_STAHJ (S-adenosylmethionine synthetase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=metK PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 4.771e-50
Identity = 94/169 (55.62%), Postives = 126/169 (74.56%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MPL   L+ +L  +L++VRK+G   +LRPDGK QVTVEY   +    P R+ T+++S+QH + +  ++I +D+K+HVI P +P+  +D++T F +NP+GRFVIGGP GDAGLTGRKII+DTYGG+  HGGG FSGKDPTKVDRS AY  R  AK+IVA+GLA +C
Sbjct:  143 TETYMPLPIFLSHQLAKRLSDVRKDGILNYLRPDGKVQVTVEYDESDK---PKRIDTIVVSSQHADDIELEQIQSDIKEHVIYPTVPEGLIDNETKFFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLADQC 308          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CLOAB (S-adenosylmethionine synthetase OS=Clostridium acetobutylicum GN=metK PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 4.771e-50
Identity = 95/166 (57.23%), Postives = 125/166 (75.30%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 500
            T E MP+   LA +L  +L EVRK+GT  +LRPDGKTQVT+EY ++     PVRV  ++ISTQH   + +++I  DL + V+K VI  + LD+ T +++NP+GRFV+GGP GD+GLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK++VA+G+A
Sbjct:  139 TKEFMPMPIALAHRLSRRLAEVRKDGTLDYLRPDGKTQVTIEYEDDK----PVRVDAIVISTQHGPEIGHEQIEKDLIEKVVKYVISPELLDENTKYYINPTGRFVVGGPQGDSGLTGRKIIVDTYGGYGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGIA 300          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_NEIMB (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup B GN=metK PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.063e-49
Identity = 94/169 (55.62%), Postives = 125/169 (73.96%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP LMP +   + +L  + +E+RK+G  PWLRPD K Q+TV Y +E G +   R+ TV++STQHD ++  +E+   + +H+IKPV+P + L D+T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA +C
Sbjct:  133 TPTLMPFAIYYSHRLMQRQSELRKDGRLPWLRPDAKAQLTVVYDSETGKVK--RIDTVVLSTQHDPSIAYEELKNAVIEHIIKPVLPSELLTDETKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYACRYVAKNIVAAGLATQC 299          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_GLOVI (S-adenosylmethionine synthetase OS=Gloeobacter violaceus GN=metK PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.063e-49
Identity = 106/179 (59.22%), Postives = 127/179 (70.95%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH----DETVTND----EIAADLKQHVIKPVIPDKYL--DDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMPL   +A +L  +L +VRK+GT  +L+PDGK QVTVEY  ++G   P R+ T+LISTQH    D+   ND     I ADL+ HVI PV  D  +  D +T   +NPSGRFVIGGP GD+GLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+ LA RC
Sbjct:  140 TPELMPLPISVAHRLTRRLAQVRKDGTLAYLKPDGKAQVTVEYERKDGVDRPGRIDTILISTQHAAVIDDLSDNDAVQARIKADLQTHVIGPVFADLDIRPDAQTRLLVNPSGRFVIGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAELADRC 318          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK1_YEAST (S-adenosylmethionine synthetase 1 OS=Saccharomyces cerevisiae GN=SAM1 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.063e-49
Identity = 94/168 (55.95%), Postives = 124/168 (73.81%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPE +PL+ +LA KL   + + R++G+  WLRPD KTQVTVEY +++G  VP R+ TV++S QH + +T +++ A LK  +I+ VIP   LD+ T + + PSGRFVIGGP GDAGLTGRKII+D YGG  + GGGAFSGKD +KVDRS AY  R  AKS+VA+GL +R
Sbjct:  133 TPEGLPLTILLAHKLNMAMADARRDGSLAWLRPDTKTQVTVEYKDDHGRWVPQRIDTVVVSAQHADEITTEDLRAQLKSEIIEKVIPRDMLDENTKYFIQPSGRFVIGGPQGDAGLTGRKIIVDAYGGASSVGGGAFSGKDYSKVDRSAAYAARWVAKSLVAAGLCKR 300          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_STAES (S-adenosylmethionine synthetase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=metK PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.388e-49
Identity = 97/169 (57.40%), Postives = 122/169 (72.19%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MPL   L+ +L  +L +VRK+    +LRPDGK QVTVEY  ++    P R+ T+++STQH E V   +I  D+K HVI P +    LDD+T F++NP+GRFVIGGP GDAGLTGRKII+DTYGG+  HGGG FSGKDPTKVDRS AY  R  AK+IVA+GLA++C
Sbjct:  143 TDTYMPLPIFLSHQLAKRLADVRKDEILDYLRPDGKVQVTVEYGEDDK---PRRIDTIVVSTQHAEDVELAQIEKDIKTHVIYPTVDKALLDDETKFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLAKQC 308          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_DEHE11.256e-5057.74S-adenosylmethionine synthetase OS=Dehalococcoides... [more]
METK_SYNJA1.640e-5059.78S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_GEOSL2.142e-5057.40S-adenosylmethionine synthetase OS=Geobacter sulfu... [more]
METK_SYNJB2.797e-5059.78S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_STAHJ4.771e-5055.62S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_CLOAB4.771e-5057.23S-adenosylmethionine synthetase OS=Clostridium ace... [more]
METK_NEIMB1.063e-4955.62S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_GLOVI1.063e-4959.22S-adenosylmethionine synthetase OS=Gloeobacter vio... [more]
METK1_YEAST1.063e-4955.95S-adenosylmethionine synthetase 1 OS=Saccharomyces... [more]
METK_STAES1.388e-4957.40S-adenosylmethionine synthetase OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
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