FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_THEFY (S-adenosylmethionine synthetase OS=Thermobifida fusca (strain YX) GN=metK PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.216e-47
Identity = 100/170 (58.82%), Postives = 122/170 (71.76%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAA-DLKQHVIKPVIPDKYLD-DKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPELMPL   LA  L  +L EVR++GT P+LRPDGKTQVTVEY        PVR+ TV++S+QH   +   E+   D+K+HV+ PV+    L+ D     +NP+GRF IGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA R
Sbjct:  141 TPELMPLPITLAHALSQRLAEVRRDGTIPYLRPDGKTQVTVEYDGNR----PVRLDTVVVSSQHAPDIDLRELLTPDIKEHVVDPVVARYNLEADNYRLLVNPTGRFEIGGPMGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPSKVDRSAAYATRWVAKNIVAAGLADR 306          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SYNR3 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain RCC307) GN=metK PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.216e-47
Identity = 101/179 (56.42%), Postives = 124/179 (69.27%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKQHVIKPVIPDKYLD---DKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPELMPL   LA +L  +L EVR NGT  +L PDGKTQV+V Y ++     PV + T+LISTQH        DE    + I+ADL  HV++P   D  L    D T + +NP+G+FV+GGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK++VA+GLAR+
Sbjct:  138 TPELMPLPISLAHRLARRLAEVRHNGTLGYLLPDGKTQVSVVYEDDQ----PVAIDTILISTQHIAEIDGISDEKGLRERISADLWTHVVEPATADLSLKPSKDTTKYLVNPTGKFVVGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARFVAKALVAAGLARK 312          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SODGM (S-adenosylmethionine synthetase OS=Sodalis glossinidius (strain morsitans) GN=metK PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.216e-47
Identity = 94/169 (55.62%), Postives = 121/169 (71.60%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L A+ ++VRKNGT PWLRPD K+QVT  Y  +NG +V +    V++STQH E +   ++   + + +IKPV+P ++L  +T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHRLVARQSQVRKNGTLPWLRPDAKSQVTFAY--DNGKVVGI--DAVVLSTQHAEDIALPQLKEAVMEEIIKPVLPAEWLSAQTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLAERC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_PHOLL (S-adenosylmethionine synthetase OS=Photorhabdus luminescens subsp. laumondii GN=metK PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 2.894e-47
Identity = 93/169 (55.03%), Postives = 118/169 (69.82%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  EVRKNG  PWLRPD K+QVT +Y N+      V V  V++STQH E ++  ++   + + +IKPV+P ++L+  T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHRLVQRQAEVRKNGVLPWLRPDAKSQVTFQYNNDK----IVGVDAVVLSTQHAENISQKDLQEAVMEEIIKPVLPAEWLNPTTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_PELPB (S-adenosylmethionine synthetase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=metK PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 2.894e-47
Identity = 101/177 (57.06%), Postives = 121/177 (68.36%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTC-PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHD-------ETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP LMP +   A  L  KL E+RK G    +LRPD K+QVT+EY NE    V  RV  V++STQHD       E    + I  D+ ++VIK VIP   +D+ T FH+NP+GRFVIGGPHGD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA +C
Sbjct:  138 TPVLMPAAIQFAQHLMKKLAEIRKEGKIMTYLRPDAKSQVTLEYENE----VVKRVDAVVVSTQHDPEPEGVSEAAWQEVIKNDIIENVIKVVIPADLIDENTKFHINPTGRFVIGGPHGDTGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAARHVAKNIVAAGLADKC 310          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHIBS (S-adenosylmethionine synthetase OS=Shigella boydii serotype 4 (strain Sb227) GN=metK PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 93/169 (55.03%), Postives = 118/169 (69.82%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +V +    V++STQH E +    +   + + +IKP++P ++L   T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKIVGI--DAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATTFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHIB3 (S-adenosylmethionine synthetase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=metK PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 93/169 (55.03%), Postives = 118/169 (69.82%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +V +    V++STQH E +    +   + + +IKP++P ++L   T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKIVGI--DAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATTFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SALTY (S-adenosylmethionine synthetase OS=Salmonella typhimurium GN=metK PE=3 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 93/169 (55.03%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +V +    V++STQH E +    +   + + +IKP++P ++L+  T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKIVGI--DAVVLSTQHAEDIDQKSLQEAVMEEIIKPILPSEWLNTSTKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SALTI (S-adenosylmethionine synthetase OS=Salmonella typhi GN=metK PE=3 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 93/169 (55.03%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +V +    V++STQH E +    +   + + +IKP++P ++L+  T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKIVGI--DAVVLSTQHAEDIDQKSLQEAVMEEIIKPILPSEWLNTSTKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SALSV (S-adenosylmethionine synthetase OS=Salmonella schwarzengrund (strain CVM19633) GN=metK PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 93/169 (55.03%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +V +    V++STQH E +    +   + + +IKP++P ++L+  T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKIVGI--DAVVLSTQHAEDIDQKSLQEAVMEEIIKPILPSEWLNTSTKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_THEFY2.216e-4758.82S-adenosylmethionine synthetase OS=Thermobifida fu... [more]
METK_SYNR32.216e-4756.42S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SODGM2.216e-4755.62S-adenosylmethionine synthetase OS=Sodalis glossin... [more]
METK_PHOLL2.894e-4755.03S-adenosylmethionine synthetase OS=Photorhabdus lu... [more]
METK_PELPB2.894e-4757.06S-adenosylmethionine synthetase OS=Pelodictyon pha... [more]
METK_SHIBS3.780e-4755.03S-adenosylmethionine synthetase OS=Shigella boydii... [more]
METK_SHIB33.780e-4755.03S-adenosylmethionine synthetase OS=Shigella boydii... [more]
METK_SALTY3.780e-4755.03S-adenosylmethionine synthetase OS=Salmonella typh... [more]
METK_SALTI3.780e-4755.03S-adenosylmethionine synthetase OS=Salmonella typh... [more]
METK_SALSV3.780e-4755.03S-adenosylmethionine synthetase OS=Salmonella schw... [more]

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Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
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