FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_NITMU (S-adenosylmethionine synthetase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=metK PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 90/169 (53.25%), Postives = 122/169 (72.19%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP+LMP+    A +L  +  E+RK+G  PWLRPD K+QV+V Y +      P R+ TV+ISTQH   +++ +++  + + VIKPV+P K L  +T + +NP+GRFV+GGP GD GLTGRKII+D+YGG   HGGGAFSGKDP+KVDRS AY  R  AK++VA+G+A RC
Sbjct:  133 TPQLMPMPIYYAHRLMERQAELRKDGRLPWLRPDAKSQVSVRYLDGK----PQRIETVVISTQHHPDISHTDLSEAIIEEVIKPVLPKKMLSGETRYLINPTGRFVVGGPMGDCGLTGRKIIVDSYGGTAHHGGGAFSGKDPSKVDRSAAYAGRYVAKNLVAAGIASRC 297          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_MYXXA (S-adenosylmethionine synthetase OS=Myxococcus xanthus GN=metK PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 93/169 (55.03%), Postives = 121/169 (71.60%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMP     A  +  +L +VR+    PW+RPDGK+QVTVEY +      P R+  V++STQH + V+N +I   +++ VI   +P K +D+KT F +NP+GR V GGP GD+GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY+ R  AK++VA+GLARRC
Sbjct:  130 TPELMPAPIHYAHAITRRLADVRRKQH-PWIRPDGKSQVTVEYRDGR----PARIDAVVVSTQHSDEVSNKKIQEAIREDVIANALPKKLIDNKTKFFINPTGRLVAGGPMGDSGLTGRKIIVDTYGGMGRHGGGAFSGKDPSKVDRSAAYMGRHIAKTVVAAGLARRC 293          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_ERWT9 (S-adenosylmethionine synthetase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=metK PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 91/169 (53.85%), Postives = 122/169 (72.19%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  + +EVRK+G  PWLRPD K+Q+T +Y  ++G +V +    V++STQH E ++  E+   + + +IKPV+P ++++  T +H+NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPVTYAHRLVQRQSEVRKSGALPWLRPDAKSQITFQY--DDGKIVGI--DAVVLSTQHAEDISQKELQEAVMEEIIKPVLPTEWINASTKYHINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CORA7 (S-adenosylmethionine synthetase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=metK PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 100/172 (58.14%), Postives = 121/172 (70.35%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPD----KYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPE MPL    A  L  +LT VRK G  P LRPDGKTQVT  Y +EN   VP R+ T++ISTQHD  VT + +A  L+ HV++ V+ D    +Y  + T   +NPSG F++GGP GDAGLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY +R  AK+IVA+GLA R
Sbjct:  146 TPEFMPLPISTAHHLSRRLTHVRKEGIVPSLRPDGKTQVTFAY-DEND--VPTRLETIVISTQHDPEVTQEWLAEQLRTHVVEWVVNDADLSQYYTEDTELLINPSGSFILGGPMGDAGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLADR 314          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_BUCAT (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=metK PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 94/169 (55.62%), Postives = 114/169 (67.46%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MP     A  L  K +E+RK    PWLRPD K+QVT +Y N N     + + TV++STQH E +T   +   +   +IKPV+PDK+L   T F +NP+GRFVIGGP GD G+TGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVASGLA RC
Sbjct:  131 TEFFMPAPITYAHLLMQKQSELRKKNILPWLRPDAKSQVTFKYNNGN----IIAIDTVVLSTQHQENITQKYLKEAVMDEIIKPVLPDKWLTKNTKFFINPTGRFVIGGPMGDCGVTGRKIIVDTYGGMSRHGGGAFSGKDPSKVDRSAAYAARYVAKNIVASGLAARC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_BUCAI (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=metK PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 94/169 (55.62%), Postives = 114/169 (67.46%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MP     A  L  K +E+RK    PWLRPD K+QVT +Y N N     + + TV++STQH E +T   +   +   +IKPV+PDK+L   T F +NP+GRFVIGGP GD G+TGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVASGLA RC
Sbjct:  131 TEFFMPAPITYAHLLMQKQSELRKKNILPWLRPDAKSQVTFKYNNGN----IIAIDTVVLSTQHQENITQKYLKEAVMDEIIKPVLPDKWLTKNTKFFINPTGRFVIGGPMGDCGVTGRKIIVDTYGGMSRHGGGAFSGKDPSKVDRSAAYAARYVAKNIVASGLAARC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_BUCA5 (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=metK PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 94/169 (55.62%), Postives = 114/169 (67.46%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MP     A  L  K +E+RK    PWLRPD K+QVT +Y N N     + + TV++STQH E +T   +   +   +IKPV+PDK+L   T F +NP+GRFVIGGP GD G+TGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVASGLA RC
Sbjct:  131 TEFFMPAPITYAHLLMQKQSELRKKNILPWLRPDAKSQVTFKYNNGN----IIAIDTVVLSTQHQENITQKYLKEAVMDEIIKPVLPDKWLTKNTKFFINPTGRFVIGGPMGDCGVTGRKIIVDTYGGMSRHGGGAFSGKDPSKVDRSAAYAARYVAKNIVASGLAARC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_BIFA0 (S-adenosylmethionine synthetase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=metK PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 102/174 (58.62%), Postives = 125/174 (71.84%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFH------LNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            T  LMPL   LA +L  +L EVRKNG   +LRPDGKTQVT+EY  EN    P+RV TVLISTQHD  V+ + +  DL++HVI+PV+ D+ L D  + H      +NP+G F++GGP  DAGLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA +
Sbjct:  144 TDVLMPLPIHLAHRLAYRLAEVRKNGEVKFLRPDGKTQVTIEYDEENR---PLRVDTVLISTQHDPEVSQEALREDLREHVIEPVL-DEVLGD-AVKHDDYRVLVNPTGSFIMGGPAADAGLTGRKIIVDTYGGAAHHGGGAFSGKDPSKVDRSAAYAARWVAKNIVAAGLAHK 312          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_ANAVT (S-adenosylmethionine synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=metK PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.780e-47
Identity = 103/179 (57.54%), Postives = 123/179 (68.72%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKQHVIKPVIPDKYL--DDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMPL   LA ++  +L  VRK G   +LRPDGKTQVTV Y  E+G   PV + TVLISTQH        DE     +I  DL   V++PV  D  +  D +T F +NP+G+FVIGGP GD+GLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+GLA +C
Sbjct:  142 TPELMPLPICLAHRIARRLAAVRKTGELSYLRPDGKTQVTVVY--EDGR--PVGIDTVLISTQHTATIGDITDEAAVQAKIKQDLWTAVVEPVFGDLEIKPDQETRFLVNPTGKFVIGGPQGDSGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLAEKC 316          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SORC5 (S-adenosylmethionine synthetase OS=Sorangium cellulosum (strain So ce56) GN=metK PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 4.937e-47
Identity = 94/169 (55.62%), Postives = 116/169 (68.64%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T ELMP     A +L  KL ++RK+    WLRPDGKTQVT+EY ++     PVRV  V++STQH   V +  I   ++  +I+  IP K +D  T  ++NP+GRFV+GGP GDAGLTGRKII+DTYGG   HGGGAFSGKDPTKVDRS  Y  R  AK++VAS LA RC
Sbjct:  133 TSELMPSPISYAHRLARKLADLRKSKKLDWLRPDGKTQVTIEYEDQT----PVRVSAVVVSTQHSPEVKHKTIVDAVRSLIIEKCIPAKLMDKSTKIYVNPTGRFVVGGPFGDAGLTGRKIIVDTYGGMGRHGGGAFSGKDPTKVDRSACYYARYVAKNVVASKLAARC 297          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_NITMU3.780e-4753.25S-adenosylmethionine synthetase OS=Nitrosospira mu... [more]
METK_MYXXA3.780e-4755.03S-adenosylmethionine synthetase OS=Myxococcus xant... [more]
METK_ERWT93.780e-4753.85S-adenosylmethionine synthetase OS=Erwinia tasmani... [more]
METK_CORA73.780e-4758.14S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK_BUCAT3.780e-4755.62S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BUCAI3.780e-4755.62S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BUCA53.780e-4755.62S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BIFA03.780e-4758.62S-adenosylmethionine synthetase OS=Bifidobacterium... [more]
METK_ANAVT3.780e-4757.54S-adenosylmethionine synthetase OS=Anabaena variab... [more]
METK_SORC54.937e-4755.62S-adenosylmethionine synthetase OS=Sorangium cellu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
back to top