FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_PSEA6 (S-adenosylmethionine synthetase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=metK PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 8.422e-47
Identity = 92/169 (54.44%), Postives = 120/169 (71.01%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  E+RK+G   WLRPD K+QVT  Y +     VPV +  V++STQH ++VT +++   + + +IKPV+P K+L  +T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA+RC
Sbjct:  131 TDVLMPAPVTYAHRLVKRQAEIRKSGQLDWLRPDAKSQVTFVYEDN----VPVGIDAVVLSTQHCDSVTTEQLREAVMEEIIKPVLPAKWLTAQTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAKRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_PELCD (S-adenosylmethionine synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=metK PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 8.422e-47
Identity = 91/169 (53.85%), Postives = 123/169 (72.78%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP+    A +L  +++EVRK+G   +LRPD K+QV+V+Y N+     PVRV TV++S+QH   V  + +   L + VIK V+P   LD+ T F++NP+GRFV+GGP GD GLTGRKII+DTYGG  +HGGGAFSGKDP+KVDRS +Y+ R  AK++VA+ LAR+C
Sbjct:  135 TSVLMPMPITYAHQLTQRMSEVRKSGLLTFLRPDSKSQVSVQYINDK----PVRVDTVVVSSQHAPDVAYETLREALIEEVIKKVVPADMLDENTKFYVNPTGRFVVGGPQGDCGLTGRKIIVDTYGGQGSHGGGAFSGKDPSKVDRSASYMARYVAKNVVAAKLARKC 299          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_PEDPA (S-adenosylmethionine synthetase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=metK PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 8.422e-47
Identity = 97/168 (57.74%), Postives = 121/168 (72.02%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            T ELMPL  +L+  L  ++ ++RK     +LRPD K +VTVEY + +    PVRV TV++STQHD  VT ++I  D+ + VIK VIP   LD+ T F++NP+GRFVIGGP GDAGLTGRKII+DTYGG   HGGGAFSGKD TKVDRS +Y  R  AK+IVA+ LA R
Sbjct:  141 TEELMPLPIMLSHHLMQRIAKLRKEQVISYLRPDAKAEVTVEYDDNDH---PVRVDTVVLSTQHDPDVTLEQIRQDVIEQVIKAVIPATLLDENTNFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGAARHGGGAFSGKDATKVDRSASYAARYIAKNIVAAKLAER 305          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_ENTS8 (S-adenosylmethionine synthetase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=metK PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 8.422e-47
Identity = 93/169 (55.03%), Postives = 120/169 (71.01%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  EVRKNGT PWLRPD K+QVT +Y   +G  + V +  V++STQH E +  + +   + + +IKPV+P ++L++ T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPVTYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY---DGGKI-VGIDAVVLSTQHAEDIEQNVLHDAVMEEIIKPVLPAEWLNESTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_ENT38 (S-adenosylmethionine synthetase OS=Enterobacter sp. (strain 638) GN=metK PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 8.422e-47
Identity = 93/169 (55.03%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  EVRKNG+ PWLRPD K+QVT +Y  ++G +V +    V++STQH E +    +   + + +IKPV+P ++L+  T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHRLVQRQAEVRKNGSLPWLRPDAKSQVTFQY--DDGKIVGI--DAVVLSTQHSEDIDQKSLQEAVMEEIIKPVLPTEWLNASTKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_NITEU (S-adenosylmethionine synthetase OS=Nitrosomonas europaea GN=metK PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.100e-46
Identity = 93/169 (55.03%), Postives = 120/169 (71.01%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP+LMPL    A +L  +  ++RK+G   WLRPD K+QV+V Y  E+G   P  + T++ISTQH   V  DE+   + + VIKPV+P + L +   + +NP+GRFV+GGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLAR+C
Sbjct:  133 TPQLMPLPIYYAHRLVEQQAKLRKSGRLSWLRPDAKSQVSVRY--EDG--FPKNIETIVISTQHSPDVPRDELVEGVIEEVIKPVLPAEMLSNHIQYLINPTGRFVVGGPMGDCGLTGRKIIVDTYGGTAHHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLARKC 297          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_METFK (S-adenosylmethionine synthetase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=metK PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.100e-46
Identity = 89/170 (52.35%), Postives = 122/170 (71.76%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 512
            TP+L+PL   L+ ++  + +++RK+G  PWLRPD K+QVT++Y +      P ++ TVLISTQH   ++ D++   + + +IKP +P + +     F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC+
Sbjct:  133 TPQLLPLPIWLSHRMVERQSQLRKDGRLPWLRPDAKSQVTIQYMDGK----PHKIDTVLISTQHAPDISLDQVRESVIEEIIKPTLPQELIKGDIKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRCL 298          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_FINM2 (S-adenosylmethionine synthetase OS=Finegoldia magna (strain ATCC 29328) GN=metK PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.100e-46
Identity = 89/165 (53.94%), Postives = 117/165 (70.91%), Query Frame = 3
Query:   15 MPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            +PL   L+ KL  +L  VRK     +LRPDGKTQVTVEY N+     P R+  +++STQHD  V  +++  D+K+ VI  ++ +  +D+ T F +NP+G+FVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTK DRS AY  R  AK++VA+GL  +C
Sbjct:  144 LPLPLELSHKLARRLATVRKEKILNYLRPDGKTQVTVEYEND----APKRIEAIVVSTQHDPDVDYEQLKEDIKREVILKIVDESMIDENTKFFINPTGKFVIGGPMGDAGLTGRKIIVDTYGGFCNHGGGAFSGKDPTKTDRSAAYFARYIAKNVVAAGLCDKC 304          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CYAA5 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain ATCC 51142) GN=metK PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.100e-46
Identity = 102/179 (56.98%), Postives = 127/179 (70.95%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVT----ND----EIAADLKQHVIKPVIPDKYL--DDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMPL   LA +   +L  VRK G   +LRPDGKTQV++ Y  E+G  +PV + T+LISTQHDET+     ND    +I +DL   V+ PV+ +  +    +T F +NP+G+FVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+GLA +C
Sbjct:  142 TPELMPLPISLAHRFSRRLAAVRKTGDLGYLRPDGKTQVSIVY--EDG--IPVGIDTILISTQHDETIDSITDNDGVQAKIKSDLWDAVVLPVLDNIGIKPSQETRFLVNPTGKFVIGGPQGDAGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYACRYVAKNIVAAGLAEKC 316          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_VIBCM (S-adenosylmethionine synthetase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=metK PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.436e-46
Identity = 91/169 (53.85%), Postives = 121/169 (71.60%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  + G +V +    V++STQH ++++  ++   + + +IKPV+P ++L  +T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+G+A RC
Sbjct:  132 TEVLMPAPITYAHRLMQRQAEVRKNGTLPWLRPDAKSQVTFQY--DQGKIVGI--DAVVLSTQHSDSISTADLREAVMEEIIKPVLPAEWLSKETKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGMADRC 296          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_PSEA68.422e-4754.44S-adenosylmethionine synthetase OS=Pseudoalteromon... [more]
METK_PELCD8.422e-4753.85S-adenosylmethionine synthetase OS=Pelobacter carb... [more]
METK_PEDPA8.422e-4757.74S-adenosylmethionine synthetase OS=Pediococcus pen... [more]
METK_ENTS88.422e-4755.03S-adenosylmethionine synthetase OS=Enterobacter sa... [more]
METK_ENT388.422e-4755.03S-adenosylmethionine synthetase OS=Enterobacter sp... [more]
METK_NITEU1.100e-4655.03S-adenosylmethionine synthetase OS=Nitrosomonas eu... [more]
METK_METFK1.100e-4652.35S-adenosylmethionine synthetase OS=Methylobacillus... [more]
METK_FINM21.100e-4653.94S-adenosylmethionine synthetase OS=Finegoldia magn... [more]
METK_CYAA51.100e-4656.98S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]
METK_VIBCM1.436e-4653.85S-adenosylmethionine synthetase OS=Vibrio cholerae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
back to top