FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_VIBC3 (S-adenosylmethionine synthetase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=metK PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.436e-46
Identity = 91/169 (53.85%), Postives = 121/169 (71.60%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  + G +V +    V++STQH ++++  ++   + + +IKPV+P ++L  +T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+G+A RC
Sbjct:  132 TEVLMPAPITYAHRLMQRQAEVRKNGTLPWLRPDAKSQVTFQY--DQGKIVGI--DAVVLSTQHSDSISTADLREAVMEEIIKPVLPAEWLSKETKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGMADRC 296          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SYNSC (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain CC9605) GN=metK PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.436e-46
Identity = 100/179 (55.87%), Postives = 120/179 (67.04%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKQHVIKPVIPDKYLD---DKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPELMPL   LA +L  +L EVR NGT  +L PDGKTQV+V Y N+     PV + T+LISTQH        DE    + I  DL  HV++P   D  L    + T + +NP+G+FV+GGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK +VA+GLA R
Sbjct:  138 TPELMPLPISLAHRLSRRLAEVRHNGTLGYLLPDGKTQVSVVYENDK----PVSIDTILISTQHTAEVDGISDEQGIRERITEDLWTHVVEPATADLALKPSREATKYLVNPTGKFVVGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKCLVAAGLAER 312          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SYNS9 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain CC9902) GN=metK PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.436e-46
Identity = 101/179 (56.42%), Postives = 121/179 (67.60%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKQHVIKPVIPDKYLD---DKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPELMPL   LA +L  +L EVR NGT  +L PDGKTQV+V Y N+     PV + T+LISTQH        DE    + I  DL  HV++P   D  L    + T + +NP+G+FV+GGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK++VASGLA R
Sbjct:  138 TPELMPLPISLAHRLARQLAEVRHNGTLDYLLPDGKTQVSVVYENDQ----PVAIDTILISTQHTAEVGGMSDEQGIRERITEDLWTHVVEPATADLNLKPSREGTKYLVNPTGKFVVGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARFVAKALVASGLAGR 312          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SYNPX (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain WH8102) GN=metK PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.436e-46
Identity = 100/179 (55.87%), Postives = 120/179 (67.04%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKQHVIKPVIPDKYLD---DKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPELMPL   LA +L  +L EVR NG+  +L PDGKTQV+V Y N+     PV + T+LISTQH        DE    + I  DL  HV++P   D  L    + T + +NP+G+FV+GGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK +VASGLA R
Sbjct:  138 TPELMPLPISLAHRLAKRLAEVRHNGSLEYLLPDGKTQVSVVYENDK----PVAIDTILISTQHTAEVAGISDEQGIRERITEDLWTHVVEPATADLALKPSREATKYLVNPTGKFVVGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKCLVASGLAER 312          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_LEGPL (S-adenosylmethionine synthetase OS=Legionella pneumophila (strain Lens) GN=metK PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.436e-46
Identity = 91/169 (53.85%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MP     A +L  KL + RK+G  PWLRPD K Q+T++Y  E G  +PV V TV+ STQH   + + ++   +++ +IK V+P ++L+DKT + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGG FSGKDP+KVDRS AY  R  AK+IVA+GLA +C
Sbjct:  132 TDVFMPAPIAYAHRLMEKLAKARKSGQLPWLRPDAKCQLTLKY--EQG--MPVEVDTVVFSTQHSPDIEHKDLVEAIREEIIKSVLPAEWLNDKTRYFINPTGRFVIGGPLGDCGLTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSAAYAARHVAKNIVAAGLADKC 296          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_LEGPH (S-adenosylmethionine synthetase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=metK PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.436e-46
Identity = 91/169 (53.85%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MP     A +L  KL + RK+G  PWLRPD K Q+T++Y  E G  +PV V TV+ STQH   + + ++   +++ +IK V+P ++L+DKT + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGG FSGKDP+KVDRS AY  R  AK+IVA+GLA +C
Sbjct:  132 TDVFMPAPIAYAHRLMEKLAKARKSGQLPWLRPDAKCQLTLKY--EQG--MPVEVDTVVFSTQHSPDIEHKDLVEAIREEIIKSVLPAEWLNDKTRYFINPTGRFVIGGPLGDCGLTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSAAYAARHVAKNIVAAGLADKC 296          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_LEGPC (S-adenosylmethionine synthetase OS=Legionella pneumophila (strain Corby) GN=metK PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.436e-46
Identity = 91/169 (53.85%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MP     A +L  KL + RK+G  PWLRPD K Q+T++Y  E G  +PV V TV+ STQH   + + ++   +++ +IK V+P ++L+DKT + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGG FSGKDP+KVDRS AY  R  AK+IVA+GLA +C
Sbjct:  132 TDVFMPAPIAYAHRLMEKLAKARKSGQLPWLRPDAKCQLTLKY--EQG--MPVEVDTVVFSTQHSPDIEHKDLVEAIREEIIKSVLPAEWLNDKTRYFINPTGRFVIGGPLGDCGLTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSAAYAARHVAKNIVAAGLADKC 296          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_LEGPA (S-adenosylmethionine synthetase OS=Legionella pneumophila (strain Paris) GN=metK PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.436e-46
Identity = 91/169 (53.85%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MP     A +L  KL + RK+G  PWLRPD K Q+T++Y  E G  +PV V TV+ STQH   + + ++   +++ +IK V+P ++L+DKT + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGG FSGKDP+KVDRS AY  R  AK+IVA+GLA +C
Sbjct:  132 TDVFMPAPIAYAHRLMEKLAKARKSGQLPWLRPDAKCQLTLKY--EQG--MPVEVDTVVFSTQHSPDIEHKDLVEAIREEIIKSVLPAEWLNDKTRYFINPTGRFVIGGPLGDCGLTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSAAYAARHVAKNIVAAGLADKC 296          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_KOSOT (S-adenosylmethionine synthetase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=metK PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.436e-46
Identity = 97/168 (57.74%), Postives = 118/168 (70.24%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            T E+MPL  VLA  L  +L  VRK       RPDGKTQVTV Y  E+G   P+ V T+++STQHD  +T +EI   +K+HVIK V+P++ + D     +NP+GRFV GGP  D GLTGRKII+DTYGGW  HGGGAFSGKDPTKVDRS  Y+ R  AK+IVA+GLA R
Sbjct:  140 TEEMMPLPIVLAHNLARRLATVRKERIVEGFRPDGKTQVTVLY--EDGK--PIGVKTIVVSTQHDPAMTQEEIEQLVKEHVIKAVVPEEMMLDGIETFVNPTGRFVKGGPAADTGLTGRKIIVDTYGGWIPHGGGAFSGKDPTKVDRSAHYMARYVAKNIVAAGLADR 303          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_KLEP3 (S-adenosylmethionine synthetase OS=Klebsiella pneumoniae (strain 342) GN=metK PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.436e-46
Identity = 93/169 (55.03%), Postives = 118/169 (69.82%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  EVRKNGT PWLRPD K+QVT +Y  ++G +V +    V++STQH E +    +   + + +IKP +P ++L+  T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPVTYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKIVGI--DAVVLSTQHAEDIDQKSLQEAVMEEIIKPTLPTEWLNASTKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_VIBC31.436e-4653.85S-adenosylmethionine synthetase OS=Vibrio cholerae... [more]
METK_SYNSC1.436e-4655.87S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SYNS91.436e-4656.42S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SYNPX1.436e-4655.87S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_LEGPL1.436e-4653.85S-adenosylmethionine synthetase OS=Legionella pneu... [more]
METK_LEGPH1.436e-4653.85S-adenosylmethionine synthetase OS=Legionella pneu... [more]
METK_LEGPC1.436e-4653.85S-adenosylmethionine synthetase OS=Legionella pneu... [more]
METK_LEGPA1.436e-4653.85S-adenosylmethionine synthetase OS=Legionella pneu... [more]
METK_KOSOT1.436e-4657.74S-adenosylmethionine synthetase OS=Kosmotoga olear... [more]
METK_KLEP31.436e-4655.03S-adenosylmethionine synthetase OS=Klebsiella pneu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
back to top