FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_THIDA (S-adenosylmethionine synthetase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=metK PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.876e-46
Identity = 91/170 (53.53%), Postives = 123/170 (72.35%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 512
            TP LMP+   LA +L  + +E+RK+G  PWLRPD K+QV++ Y +      P  + TV++STQHD  V++ +++  + + +IKPV+P   L   T + +NP+GRFV+GGP GDAGLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA +C+
Sbjct:  134 TPVLMPMPIHLAHRLTERQSELRKDGRLPWLRPDAKSQVSIRYVDGK----PHSIDTVVLSTQHDPEVSHAQLSEAVIEEIIKPVLPKDMLSADTRYLVNPTGRFVVGGPMGDAGLTGRKIIVDTYGGASPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADKCM 299          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHEPA (S-adenosylmethionine synthetase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=metK PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.876e-46
Identity = 94/169 (55.62%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     + KL  + +EVRK+ T PWLRPD K+QVT  Y N +G++  +    V++STQH E VT  ++   + + +IKPV+P K+L   T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYSHKLVKRQSEVRKDKTLPWLRPDAKSQVTFAY-NSDGSIAGI--DAVVLSTQHSEDVTQADLIEGVMETIIKPVLPAKWLSKDTKYFINPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 296          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHEFN (S-adenosylmethionine synthetase OS=Shewanella frigidimarina (strain NCIMB 400) GN=metK PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.876e-46
Identity = 93/169 (55.03%), Postives = 121/169 (71.60%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A KL  + +EVRK+GT PWLRPD K+QVT  Y  ++G ++ +    +++STQH E VT  ++   + + +IKPV+P ++L+  T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHKLVKRQSEVRKDGTLPWLRPDAKSQVTFAY--DDGKIIGI--DAIVLSTQHREDVTQADLIEAVMETIIKPVLPAQWLNKDTKYFINPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SALTO (S-adenosylmethionine synthetase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=metK PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.876e-46
Identity = 97/173 (56.07%), Postives = 125/173 (72.25%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAA-DLKQHVIKPVIPDKYLD-DKTIFHL--NPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMP+   LA +L  +L +VR+ G  P+LRPDGKTQVTVEY      + PVR++TVL+S+QH   V+ + +   D+++HVI P +    L  D   + L  NP+GRF +GGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDP+KVDRS AY +R  AK++VA+GLA RC
Sbjct:  141 TPELMPMPIALAHRLSRRLAQVRREGVVPYLRPDGKTQVTVEYEG----LRPVRLNTVLVSSQHAADVSLESLLTPDVREHVIAPEVEGLGLGLDVEDYRLLVNPTGRFEVGGPMGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAERC 309          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_NITEC (S-adenosylmethionine synthetase OS=Nitrosomonas eutropha (strain C91) GN=metK PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.876e-46
Identity = 90/169 (53.25%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP+LMPL    A +L  +  ++RK+G   WLRPD K+QV+V Y +      P  + TV+ISTQHD  ++N ++   + + +IKPV+P + L     + +NP+GRFV+GGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLAR+C
Sbjct:  133 TPQLMPLPIYYAHRLVEQQAKLRKSGQLSWLRPDAKSQVSVRYIDGK----PKNIETVVISTQHDPDISNGDLFEGVVEEIIKPVLPAEMLSSDIRYLVNPTGRFVVGGPMGDCGLTGRKIIVDTYGGTAHHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLARKC 297          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_MYCSM (S-adenosylmethionine synthetase OS=Mycobacterium smegmatis GN=metK PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.876e-46
Identity = 96/173 (55.49%), Postives = 125/173 (72.25%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTND-EIAADLKQHVIKPVIPDKYLD--DKTIFHL--NPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPELMPL   LA +L  +LTEVRKNG   +LRPDGKTQVT++Y        PVR+ TV++STQH + +  +  +  D+++ V+  V+ D   +  D + + L  NP+G+FV+GGP GDAGLTGRKII+DTYGGW  HGGGAFSGKDP+KVDRS AY +R  AK++VA+GLA R
Sbjct:  142 TPELMPLPIALAHRLARRLTEVRKNGVLDYLRPDGKTQVTIQY----DGTTPVRLDTVVLSTQHADGIDLEGTLTPDIREKVVNTVLADLGHETLDTSDYRLLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAER 310          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_MYCS2 (S-adenosylmethionine synthetase OS=Mycobacterium smegmatis GN=metK PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.876e-46
Identity = 96/173 (55.49%), Postives = 125/173 (72.25%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTND-EIAADLKQHVIKPVIPDKYLD--DKTIFHL--NPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPELMPL   LA +L  +LTEVRKNG   +LRPDGKTQVT++Y        PVR+ TV++STQH + +  +  +  D+++ V+  V+ D   +  D + + L  NP+G+FV+GGP GDAGLTGRKII+DTYGGW  HGGGAFSGKDP+KVDRS AY +R  AK++VA+GLA R
Sbjct:  142 TPELMPLPIALAHRLARRLTEVRKNGVLDYLRPDGKTQVTIQY----DGTTPVRLDTVVLSTQHADGIDLEGTLTPDIREKVVNTVLADLGHETLDTSDYRLLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAER 310          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CHLPD (S-adenosylmethionine synthetase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=metK PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.876e-46
Identity = 102/177 (57.63%), Postives = 123/177 (69.49%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTC-PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHD---ETVTNDE----IAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMP +   A +L  KL E+RK G    +LRPD K+QVT+EY +E       RV  V++STQHD   E V+  E    I  D+ ++VI  VIP   LD+KT  H+NP+GRFVIGGPHGD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA +C
Sbjct:  138 TPELMPAALQFAQQLVKKLAEIRKEGKIMTYLRPDAKSQVTLEYVDEQVK----RVDAVVVSTQHDPEPEGVSEAEWQAVIKKDIIENVINVVIPAALLDEKTKLHINPTGRFVIGGPHGDTGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYASRHVAKNIVAAGLADKC 310          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_WIGBR (S-adenosylmethionine synthetase OS=Wigglesworthia glossinidia brevipalpis GN=metK PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.450e-46
Identity = 89/169 (52.66%), Postives = 117/169 (69.23%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MP     A KL  + +EVRK    PWLRPD K+Q+T  Y N+      V + TV+IS+QH E +   ++   + + +I+P++P K++ +KT + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGG+FSGKDP+KVDRS AY +R  AK+IVASGLA RC
Sbjct:  131 TETFMPAPITYANKLMIRQSEVRKKNILPWLRPDAKSQITFIYENKK----IVGIDTVIISSQHSEEINLSDLREGIMEEIIQPILPKKWISNKTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGSFSGKDPSKVDRSAAYALRYVAKNIVASGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_THICR (S-adenosylmethionine synthetase OS=Thiomicrospira crunogena (strain XCL-2) GN=metK PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.450e-46
Identity = 95/169 (56.21%), Postives = 118/169 (69.82%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  K  E+RK G   WLRPD K+QVT+ Y  E+G   PV V  V++STQH   V N ++   + + +IKPV+P+ +L   T +H+NP+GRFVIGGP GDAGLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA +C
Sbjct:  131 TDVLMPAPIYFAHRLMEKQAELRKAGKLDWLRPDAKSQVTLRY--EDGQ--PVAVDAVVLSTQHSPEVDNKDLHEAVMEEIIKPVLPEGWLHSGTQYHINPTGRFVIGGPVGDAGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADKC 295          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_THIDA1.876e-4653.53S-adenosylmethionine synthetase OS=Thiobacillus de... [more]
METK_SHEPA1.876e-4655.62S-adenosylmethionine synthetase OS=Shewanella peal... [more]
METK_SHEFN1.876e-4655.03S-adenosylmethionine synthetase OS=Shewanella frig... [more]
METK_SALTO1.876e-4656.07S-adenosylmethionine synthetase OS=Salinispora tro... [more]
METK_NITEC1.876e-4653.25S-adenosylmethionine synthetase OS=Nitrosomonas eu... [more]
METK_MYCSM1.876e-4655.49S-adenosylmethionine synthetase OS=Mycobacterium s... [more]
METK_MYCS21.876e-4655.49S-adenosylmethionine synthetase OS=Mycobacterium s... [more]
METK_CHLPD1.876e-4657.63S-adenosylmethionine synthetase OS=Chlorobium phae... [more]
METK_WIGBR2.450e-4652.66S-adenosylmethionine synthetase OS=Wigglesworthia ... [more]
METK_THICR2.450e-4656.21S-adenosylmethionine synthetase OS=Thiomicrospira ... [more]

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Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
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