FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_STRCO (S-adenosylmethionine synthetase OS=Streptomyces coelicolor GN=metK PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.450e-46
Identity = 99/176 (56.25%), Postives = 125/176 (71.02%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAA-DLKQHVIKP----VIPDKYLDDKTIFHL--NPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP LMPL   LA +L  +L+EVRKNGT P+LRPDGKTQVT+EY  +      VR+ TV++S+QH   +  + + A D+K+ V++P    ++ D    D   + L  NP+GRF IGGP GDAGLTGRKIIIDTYGG   HGGGAFSGKDP+KVDRS AY +R  AK++VA+GLA RC
Sbjct:  141 TPTLMPLPVFLAHRLSKRLSEVRKNGTIPYLRPDGKTQVTIEYDGDKA----VRLDTVVVSSQHASDIDLESLLAPDIKEFVVEPELKALLEDGIKIDTENYRLLVNPTGRFEIGGPMGDAGLTGRKIIIDTYGGMARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAARC 312          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHEDO (S-adenosylmethionine synthetase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=metK PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.450e-46
Identity = 94/169 (55.62%), Postives = 120/169 (71.01%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A  L  + +EVRK+GT PWLRPD K+QVT  Y  E+G +V +    +++STQH E VT  ++   + + +IKPV+P ++L+  T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHALVKRQSEVRKDGTLPWLRPDAKSQVTFAY--EDGKIVGI--DAIVLSTQHREDVTQADLIEGVMETIIKPVLPAQWLNKDTKYFINPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_NITSB (S-adenosylmethionine synthetase OS=Nitratiruptor sp. (strain SB155-2) GN=metK PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.450e-46
Identity = 90/168 (53.57%), Postives = 117/168 (69.64%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            T  LMPL   +A +L  +L   RK G  P+LRPDGK QVTV+Y +      P ++ T++ISTQHD  V+ + +   + + ++  VIP + + D  ++H+NP+GRFVIGGP GDAGLTGRKII+DTYGG   HGGGAFSGKDPTKVDRSGAY  R  AK++VASG   +
Sbjct:  131 TDVLMPLPITMAHRLTQELANARKEGVLPFLRPDGKAQVTVQYVDGK----PKKIKTIVISTQHDPDVSYNRLKDAVIEEIVYKVIPKELIADDIVYHINPTGRFVIGGPQGDAGLTGRKIIVDTYGGSCPHGGGAFSGKDPTKVDRSGAYAARYVAKNLVASGACEK 294          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CYAP8 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain PCC 8801) GN=metK PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.450e-46
Identity = 100/179 (55.87%), Postives = 126/179 (70.39%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTN--------DEIAADLKQHVIKPVIPDKYL--DDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPE MPL   LA ++  +L  VRK G  P+LRPDGKTQV++ Y  E+G   PV + T+LISTQH ET+ +         +I +DL + V++PV  D  +  +  T F +NP+G+FVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+GLA +C
Sbjct:  142 TPEFMPLPISLAHRISRRLAAVRKMGELPYLRPDGKTQVSIVY--EDGK--PVGIDTILISTQHTETIDSLTENSAVQAKIKSDLWEAVVQPVFGDIEIKPNQDTRFLVNPTGKFVIGGPQGDAGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYACRYVAKNIVAAGLADKC 316          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CYAP4 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=metK PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.450e-46
Identity = 102/179 (56.98%), Postives = 121/179 (67.60%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKQHVIKPVIPDKYL--DDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPE MPL   LA ++  KL  VRK    P+LRPDGKTQVTV Y  E+G   PV + T+LISTQH        DE     +I  DL   V++PV  D  +  D  T F +NP+G+FVIGGP GD+GLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+GLA +C
Sbjct:  142 TPEFMPLPISLAHRMARKLAAVRKTHQLPYLRPDGKTQVTVIY--EDGR--PVGIDTILISTQHTPTIGEISDEAEVQAKIKQDLWTMVVQPVFSDLTVKPDQNTRFLVNPTGKFVIGGPQGDSGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLAEKC 316          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CORJK (S-adenosylmethionine synthetase OS=Corynebacterium jeikeium (strain K411) GN=metK PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.450e-46
Identity = 99/174 (56.90%), Postives = 121/174 (69.54%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLD------DKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPE MPL   LA +L  +LTEVRK G  P LRPDGKTQVT  Y  E     PVR+ TV++STQHD  +  + +   ++ HV++ V+ +  L       D T+  +NPSG FV+GGP GDAGLTGRKII+DTYGG   HGGGAFSGKDP+KVDRSGAY +R  AK+IVA+GLA R
Sbjct:  146 TPEYMPLPIALAHRLSRRLTEVRKKGIVPHLRPDGKTQVTFAYDAEGA---PVRLDTVVVSTQHDAGIEQEWLHEQIRTHVVQHVLDEAGLSGNLADTDYTLL-VNPSGSFVLGGPMGDAGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSGAYAMRWVAKNIVAAGLADR 315          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_BUCAP (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=metK PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.450e-46
Identity = 94/169 (55.62%), Postives = 118/169 (69.82%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A  L  K +E+RK     WLRPD K+QVT +Y  +NG ++ +   TV+ STQH E++T D +   + + +IKPV+P+K+L   T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TEVLMPAPITYAHLLVKKQSELRKKNILHWLRPDAKSQVTFKY--KNGRIIGI--DTVVFSTQHKESITQDVLKEAVMEEIIKPVLPNKWLTKNTKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMSRHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_VIBPA (S-adenosylmethionine synthetase OS=Vibrio parahaemolyticus GN=metK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.200e-46
Identity = 91/169 (53.85%), Postives = 120/169 (71.01%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     + +L  K  EVRKNGT PWLRPD K+QVT +Y  + G +V +    V++STQH ++++  ++   + + +IKPV+P +++   T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+G+A RC
Sbjct:  131 TEVLMPAPITYSHRLVEKQAEVRKNGTLPWLRPDAKSQVTFQY--DQGKIVGI--DAVVLSTQHCDSISTPDLREAVMEEIIKPVLPAEWISKDTNFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGMADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_STRGG (S-adenosylmethionine synthetase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=metK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.200e-46
Identity = 99/176 (56.25%), Postives = 125/176 (71.02%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAA-DLKQ----HVIKPVIPDKYLDDKTIFHL--NPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMPL   +A +L  +L+EVRKNGT P+LRPDGKTQVT+EY  +      VR+ TV++S+QH   +  D + A D+++    HV+  ++ D    D   + L  NP+GRF IGGP GDAGLTGRKIIIDTYGG   HGGGAFSGKDP+KVDRS AY +R  AK++VA+GLA RC
Sbjct:  141 TPELMPLPIHVAHRLSRRLSEVRKNGTIPYLRPDGKTQVTIEYDGDKA----VRLDTVVVSSQHASDIDLDSLLAPDIREFVVEHVLAQLVEDGIKLDTEGYRLLVNPTGRFEIGGPMGDAGLTGRKIIIDTYGGMARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAARC 312          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHEB9 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS195) GN=metK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.200e-46
Identity = 94/169 (55.62%), Postives = 120/169 (71.01%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A  L  + +EVRKNGT PWLRPD K+QVT  Y  ++G +V +    V++STQH + V+  ++   + + +IKPV+P ++L+  T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAY--DDGKIVGI--DAVVLSTQHRDDVSQADLIEGVMETIIKPVLPAQWLNKDTKFFINPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_STRCO2.450e-4656.25S-adenosylmethionine synthetase OS=Streptomyces co... [more]
METK_SHEDO2.450e-4655.62S-adenosylmethionine synthetase OS=Shewanella deni... [more]
METK_NITSB2.450e-4653.57S-adenosylmethionine synthetase OS=Nitratiruptor s... [more]
METK_CYAP82.450e-4655.87S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]
METK_CYAP42.450e-4656.98S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]
METK_CORJK2.450e-4656.90S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK_BUCAP2.450e-4655.62S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_VIBPA3.200e-4653.85S-adenosylmethionine synthetase OS=Vibrio parahaem... [more]
METK_STRGG3.200e-4656.25S-adenosylmethionine synthetase OS=Streptomyces gr... [more]
METK_SHEB93.200e-4655.62S-adenosylmethionine synthetase OS=Shewanella balt... [more]

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Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
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